Personal tools

UBERON:0000118

From FANTOM5_SSTAR

Jump to: navigation, search

Name:lung bud
Namespace:FANTOM
Definition:"Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds]
Xrefs:
links:

BTO:0001643
EHDAA2:0004089
[ 200px-Gray948.png 200px-Gray948.png]
ncithesaurus:Primary_Bronchial_Bud
ncithesaurus:Respiratory_Diverticulum

SCTID:361427007
Synonyms: "lung bud" RELATED PLURAL []
"primary lung bud" RELATED [GO:0060572]
"respiratory diverticulum" RELATED [Wikipedia:Lung_buds]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005153(epithelial bud),UBERON:0005911(endo-epithelium)
develops_from:UBERON:0005597(lung primordium),UBERON:0008947(respiratory primordium)



Children

develops from:UBERON:0002048 (lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000118 (lung bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.5e-81FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_0c6774dc0fc5c12fe6f1e11e3c5a7ea0p4@Tbx4
3.5e-81FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_0c6774dc0fc5c12fe6f1e11e3c5a7ea0p4@Tbx4
1.94e-76FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2a840244afd700eed1fd220726812e19p1@ENSMUST00000134305
1.94e-76FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2a840244afd700eed1fd220726812e19p1@ENSMUST00000134305
6.06e-75FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_1717f3bcd92032d47f05905f2350f356p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
6.06e-75FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_1717f3bcd92032d47f05905f2350f356p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
7.98e-75FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_c4382425bdc59c0a70b6f62d538616eep6@Tbx4
7.98e-75FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_c4382425bdc59c0a70b6f62d538616eep6@Tbx4
3.64e-74FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_64137b09a5887372273d01e6843a3855p@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_64137b09a5887372273d01e6843a3855p@chr12:57598716..57598720, -
3.64e-74FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_64137b09a5887372273d01e6843a3855p@chr12:57636003..57636017, -
3.64e-74FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_64137b09a5887372273d01e6843a3855p@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_64137b09a5887372273d01e6843a3855p@chr8:94878479..94878503, -
3.64e-74FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_64137b09a5887372273d01e6843a3855p@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_64137b09a5887372273d01e6843a3855p@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_64137b09a5887372273d01e6843a3855p@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_64137b09a5887372273d01e6843a3855p@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_64137b09a5887372273d01e6843a3855p@chr12:57636003..57636017, -
3.06e-70FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_42cfdaaf4b7a1732dfa9ea19e9f7ed0fp8@Nkx2-1
3.06e-70FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_42cfdaaf4b7a1732dfa9ea19e9f7ed0fp8@Nkx2-1
3.48e-70FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_9a2afd9917323378ab15577084408fabp2@E030019B13Rik
3.48e-70FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_9a2afd9917323378ab15577084408fabp2@E030019B13Rik
3.96e-70FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_b2c78f184d2e03a7838901bfb1d85876p10@Nebl
3.96e-70FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_b2c78f184d2e03a7838901bfb1d85876p10@Nebl
4.5e-70FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_87a278cf51a142a28715606fe9679053p9@Nkx2-1
4.5e-70FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_87a278cf51a142a28715606fe9679053p9@Nkx2-1
9.69e-69FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_c6ab621df6f74b29687ac8ae14e22ca6p@chr12:57598537..57598547, -
9.69e-69FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_c6ab621df6f74b29687ac8ae14e22ca6p3@E030019B13Rik
9.69e-69FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_c6ab621df6f74b29687ac8ae14e22ca6p3@E030019B13Rik
9.69e-69FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_c6ab621df6f74b29687ac8ae14e22ca6p3@Trpm6
9.69e-69FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_c6ab621df6f74b29687ac8ae14e22ca6p3@Trpm6
9.69e-69FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_c6ab621df6f74b29687ac8ae14e22ca6p@chr12:57598537..57598547, -
1.11e-68FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_ae4f793183db9de06e10a2872856af05p@chr14:115241755..115241762, -
1.11e-68FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_ae4f793183db9de06e10a2872856af05p@chr14:115241755..115241762, -
1.27e-68FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_cc54afc4a4656b6df3e3bfc1114fc373p@chr4:138812999..138813015, +
1.27e-68FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_cc54afc4a4656b6df3e3bfc1114fc373p@chr4:138812999..138813015, +
4.47e-68FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c63d69373c753807182a75c0583cafe1p@chr5:120282691..120282701, +
4.47e-68FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c63d69373c753807182a75c0583cafe1p@chr5:120282691..120282701, +
5.44e-68FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_d3b1edeffe2f553ba411a688d9bac3f7p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_d3b1edeffe2f553ba411a688d9bac3f7p4@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_d3b1edeffe2f553ba411a688d9bac3f7p3@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_d3b1edeffe2f553ba411a688d9bac3f7p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_d3b1edeffe2f553ba411a688d9bac3f7p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_d3b1edeffe2f553ba411a688d9bac3f7p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_d3b1edeffe2f553ba411a688d9bac3f7p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_d3b1edeffe2f553ba411a688d9bac3f7p3@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_d3b1edeffe2f553ba411a688d9bac3f7p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_d3b1edeffe2f553ba411a688d9bac3f7p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_d3b1edeffe2f553ba411a688d9bac3f7p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_d3b1edeffe2f553ba411a688d9bac3f7p4@Sftpb
5.08e-66FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_bf8edbaeb647932e7f155531e096d4f5p4@E030019B13Rik
5.08e-66FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_bf8edbaeb647932e7f155531e096d4f5p4@E030019B13Rik
4.92e-64FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_5e6db023f53a78e4f28ac1d8d9ea501cp@chr12:57623172..57623185, -
4.92e-64FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_5e6db023f53a78e4f28ac1d8d9ea501cp@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_5e6db023f53a78e4f28ac1d8d9ea501cp@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_5e6db023f53a78e4f28ac1d8d9ea501cp@chr12:57623172..57623185, -
5.59e-64FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_332cd94b9a53394e37d98f21451f5dc2p@chr5:28785436..28785450, -
5.59e-64FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_332cd94b9a53394e37d98f21451f5dc2p@chr5:28785436..28785450, -
6.35e-64FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_d9cb73ae931c9ea9ff3a26e43e65f219p@chr14:70922459..70922482, -
6.35e-64FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_d9cb73ae931c9ea9ff3a26e43e65f219p@chr14:70922459..70922482, -
2.55e-63FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_6861b5d8f185956c69749d22b0339571p4@Etv5
2.55e-63FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_6861b5d8f185956c69749d22b0339571p4@Etv5
1.43e-62FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_eb4eca4a539e1b64cbebe6513f1b0a78p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_eb4eca4a539e1b64cbebe6513f1b0a78p4@Lamp3
1.43e-62FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_eb4eca4a539e1b64cbebe6513f1b0a78p@chr12:57376690..57376716, -
1.63e-62FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_36a4d0c4dfe971ac1f0561a0a9d9bbfdp@chr6:72264609..72264653, -
1.63e-62FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_36a4d0c4dfe971ac1f0561a0a9d9bbfdp@chr6:72264609..72264653, -
1.87e-62FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_df8cc23e5a9e45271323b4ba8a53e420p@chr6:129378567..129378573, -
1.87e-62FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_df8cc23e5a9e45271323b4ba8a53e420p@chr6:129378567..129378573, -
1.91e-62FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_5f056a71071ce73589d8555cfee0c8b5p16@Pde5a
1.91e-62FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_5f056a71071ce73589d8555cfee0c8b5p16@Pde5a
3.02e-62FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_b218b5f70a9db91bf930011e901bc68ap7@Nkx2-1
3.02e-62FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_b218b5f70a9db91bf930011e901bc68ap7@Nkx2-1
5.06e-62FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_ad6b22fe1ceb69b6e47800545a7b6208p@chr12:57636936..57636953, -
5.06e-62FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_ad6b22fe1ceb69b6e47800545a7b6208p@chr12:57636936..57636953, -
7.58e-62FFCP PHASE1:Mm9::chr17:67043399..67043410,-#_2ce4af1de2e956bc008d65dd654e47adp9@Ptprm
7.58e-62FFCP PHASE1:Mm9::chr2:126950686..126950702,-#_2ce4af1de2e956bc008d65dd654e47adp@chr2:126950686..126950702, -
7.58e-62FFCP PHASE1:Mm9::chr6:72260761..72260774,-#_2ce4af1de2e956bc008d65dd654e47adp@chr6:72260761..72260774, -
7.58e-62FFCP PHASE1:Mm9::chr14:41949922..41949935,+#_2ce4af1de2e956bc008d65dd654e47adp@chr14:41949922..41949935, +
7.58e-62FFCP PHASE2:Mm9::chr6:72259749..72259765,+#_2ce4af1de2e956bc008d65dd654e47adp@chr6:72259749..72259765, +
7.58e-62FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_2ce4af1de2e956bc008d65dd654e47adp6@E030019B13Rik
7.58e-62FFCP PHASE2:Mm9::chr14:41949922..41949935,+#_2ce4af1de2e956bc008d65dd654e47adp@chr14:41949922..41949935, +
7.58e-62FFCP PHASE1:Mm9::chr14:70931508..70931519,+#_2ce4af1de2e956bc008d65dd654e47adp@chr14:70931508..70931519, +
7.58e-62FFCP PHASE2:Mm9::chr17:67043399..67043410,-#_2ce4af1de2e956bc008d65dd654e47adp9@Ptprm
7.58e-62FFCP PHASE2:Mm9::chr2:152591095..152591110,-#_2ce4af1de2e956bc008d65dd654e47adp@chr2:152591095..152591110, -
7.58e-62FFCP PHASE1:Mm9::chr14:41949964..41949979,+#_2ce4af1de2e956bc008d65dd654e47adp@chr14:41949964..41949979, +
7.58e-62FFCP PHASE2:Mm9::chr6:72264657..72264693,-#_2ce4af1de2e956bc008d65dd654e47adp@chr6:72264657..72264693, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000118&oldid=3277070"