UBERON:0000916
From FANTOM5_SSTAR
| Name: | abdomen | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen] | |
| Xrefs: |
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| Synonyms: |
"abdominopelvic region" EXACT [FMA:9577] "abdominopelvis" EXACT [FMA:9577] "adult abdomen" RELATED [] "belly" RELATED [] | |
| Comments: | Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class | |
| Alt_id: | UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298 | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009569(subdivision of trunk) |
|---|---|
| part_of: | UBERON:0002417(abdominal segment of trunk) |
Children
| part of: | UBERON:0002106 (spleen),UBERON:0002107 (liver),UBERON:0002110 (gallbladder),UBERON:0002113 (kidney),UBERON:0002369 (adrenal gland),UBERON:0003497 (abdomen blood vessel),UBERON:0003567 (abdomen connective tissue),UBERON:0003684 (abdominal cavity),UBERON:0003697 (abdominal wall),UBERON:0005172 (abdomen element),UBERON:0006858 (adrenal/interrenal gland),UBERON:0017672 (abdominal viscera) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10081-102A9 (adrenal gland, adult, pool1)
- 10086-102B5 (liver, fetal, pool1)
- 10088-102B7
- 10089-102B8
- 10095-102C5
... further results Mouse (Mus musculus)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10081-102A9 (adrenal gland, adult, pool1)
- 10086-102B5 (liver, fetal, pool1)
- 10088-102B7
- 10089-102B8
- 10095-102C5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000916 (abdomen), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
