UBERON:0001021
From FANTOM5_SSTAR
Name: | nerve | ||
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Namespace: | FANTOM | ||
Definition: | "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nervous_system, ZFA:0007009, ZFIN:curator] | ||
Xrefs: |
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Synonyms: | "neural subtree" RELATED [FMA:65132] | ||
Comments: | check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment | ||
Alt_id: |
UBERON:FBbt_00005099-FMA_5914 UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000122(neuron projection bundle) |
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part_of: | UBERON:0000010(peripheral nervous system) |
Children
is a: | UBERON:0001785 (cranial nerve),UBERON:0002003 (peripheral nerve),UBERON:0004904 (nerve connecting eye with brain) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Mouse (Mus musculus)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001021 (nerve), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4 | p@chr12:57628762..57628773, - |
5.42e-195 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4 | p@chr12:57628762..57628773, - |
9.37e-99 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7b | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7b | p@chr5:149250331..149250335, - |
2.55e-98 | FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr8:126163123..126163134, + |
2.55e-98 | FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr4:188536760..188536764, - |
2.55e-98 | FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr19:48479835..48479841, - |
2.55e-98 | FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr7:103086717..103086724, + |
2.55e-98 | FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr7:77789390..77789399, - |
2.55e-98 | FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr19:35978717..35978722, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_5f828c8a1ebb642a109db98d40eb5b79 | p25@SOX2-OT |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr14:68527802..68527806, + |
2.55e-98 | FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr7:152790347..152790351, + |
2.55e-98 | FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr7:152790347..152790351, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:109466651..109466653, + |
2.55e-98 | FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr11:30166055..30166059, - |
2.55e-98 | FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_5f828c8a1ebb642a109db98d40eb5b79 | p3@BC098451 |
2.55e-98 | FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr14:88034381..88034386, - |
2.55e-98 | FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr1:7709325..7709329, + |
2.55e-98 | FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr19:48479835..48479841, - |
2.55e-98 | FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr7:103086717..103086724, + |
2.55e-98 | FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr7:77789390..77789399, - |
2.55e-98 | FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr19:35978717..35978722, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:109466651..109466653, + |
2.55e-98 | FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr18:45498690..45498695, - |
2.55e-98 | FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr16:55740953..55740956, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr1:7709325..7709329, + |
2.55e-98 | FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_5f828c8a1ebb642a109db98d40eb5b79 | p12@C16orf62 |
2.55e-98 | FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr10:22768515..22768517, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:103200303..103200307, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:103200303..103200307, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr14:78718132..78718157, + |
2.55e-98 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_5f828c8a1ebb642a109db98d40eb5b79 | p3@ENST00000558781 |
2.55e-98 | FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr1:44991346..44991355, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_5f828c8a1ebb642a109db98d40eb5b79 | p22@SOX2-OT |
2.55e-98 | FFCP PHASE1:Hg19::chr12:296753..296755,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr12:296753..296755, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr3:77060783..77060789, + |
2.55e-98 | FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr12:59444098..59444102, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:165170873..165170919, - |
2.55e-98 | FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chrX:25873187..25873209, + |
2.55e-98 | FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_5f828c8a1ebb642a109db98d40eb5b79 | p9@TCF25 |
2.55e-98 | FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr1:44991346..44991355, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr10:22768515..22768517, + |
2.55e-98 | FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr11:57030314..57030346, + |
2.55e-98 | FFCP PHASE2:Hg19::chr3:77060783..77060789,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr3:77060783..77060789, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:165170873..165170919, - |
2.55e-98 | FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr14:85119696..85119699, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr3:131712314..131712315, - |
2.55e-98 | FFCP PHASE2:Hg19::chr18:61506836..61506840,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr18:61506836..61506840, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr16:51174920..51174928, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr12:68567714..68567717, + |
2.55e-98 | FFCP PHASE2:Hg19::chr3:131712314..131712315,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr3:131712314..131712315, - |
2.55e-98 | FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr12:72875355..72875358, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr1:86911063..86911068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_5f828c8a1ebb642a109db98d40eb5b79 | p10@PPAP2A |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr14:68589926..68589929, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr1:86911063..86911068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:192696669..192696673,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:192696669..192696673, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:242808350..242808356,+#_5f828c8a1ebb642a109db98d40eb5b79 | p2@LOC100131763 |
2.55e-98 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_5f828c8a1ebb642a109db98d40eb5b79 | p59@ANK3 |
2.55e-98 | FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_5f828c8a1ebb642a109db98d40eb5b79 | p10@PPAP2A |
2.55e-98 | FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_5f828c8a1ebb642a109db98d40eb5b79 | p4@SNORD111B |
2.55e-98 | FFCP PHASE1:Hg19::chr2:240176859..240176904,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:240176859..240176904, - |
2.55e-98 | FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr15:36402459..36402465, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_5f828c8a1ebb642a109db98d40eb5b79 | p2@LOC100131763 |
2.55e-98 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:240176859..240176904, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr3:163246025..163246029, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr16:66170755..66170759, - |
2.55e-98 | FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:97626726..97626741, + |
2.55e-98 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr21:45724075..45724081, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_5f828c8a1ebb642a109db98d40eb5b79 | p25@SOX2-OT |
2.55e-98 | FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr12:59444098..59444102, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr14:37227792..37227796, - |
2.55e-98 | FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_5f828c8a1ebb642a109db98d40eb5b79 | p18@TGFB3 |
2.55e-98 | FFCP PHASE2:Hg19::chr12:296753..296755,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr12:296753..296755, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr3:163246025..163246029, + |
2.55e-98 | FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr11:30166055..30166059, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_5f828c8a1ebb642a109db98d40eb5b79 | p@chr2:97626726..97626741, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.