UBERON:0001135
From FANTOM5_SSTAR
| Name: | smooth muscle tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"involuntary muscle" EXACT [] "non-striated muscle" EXACT [] "smooth muscle" EXACT [] "textus muscularis levis; textus muscularis nonstriatus" RELATED LATIN [Wikipedia:Smooth_muscle_tissue] "textus muscularis nonstriatus" EXACT [FMA:14070, FMA:TA] "visceral muscle" NARROW SENSU [] "visceral muscle tissue" NARROW SENSU [] | ||
| Comments: | terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells. | ||
| Alt_id: | UBERON:FMA_14070-MA_0002440 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002385(muscle tissue) |
|---|---|
| disjoint_from: | UBERON:0002036(striated muscle tissue) |
Children
| is a: | UBERON:0004225 (respiratory system smooth muscle),UBERON:0004237 (blood vessel smooth muscle),UBERON:0004695 (arterial system smooth muscle) |
|---|---|
| derives from: | FF:0010048 (human smooth muscle - adult sample) |
| part of: | FF:0000181 (human smooth muscle of colon sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
... further results Mouse (Mus musculus)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001135 (smooth muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_6d9c49034d14824073ca32b49dffa6c2 | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_6d9c49034d14824073ca32b49dffa6c2 | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_6d9c49034d14824073ca32b49dffa6c2 | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_6d9c49034d14824073ca32b49dffa6c2 | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_6d9c49034d14824073ca32b49dffa6c2 | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_6d9c49034d14824073ca32b49dffa6c2 | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_6d9c49034d14824073ca32b49dffa6c2 | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_6d9c49034d14824073ca32b49dffa6c2 | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_6d9c49034d14824073ca32b49dffa6c2 | p@chr2:178190171..178190178, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_de67448da74770cac54c6a6da4a1d355 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_de67448da74770cac54c6a6da4a1d355 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_de67448da74770cac54c6a6da4a1d355 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_de67448da74770cac54c6a6da4a1d355 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_de67448da74770cac54c6a6da4a1d355 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_de67448da74770cac54c6a6da4a1d355 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_de67448da74770cac54c6a6da4a1d355 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_de67448da74770cac54c6a6da4a1d355 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_de67448da74770cac54c6a6da4a1d355 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_de67448da74770cac54c6a6da4a1d355 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_de67448da74770cac54c6a6da4a1d355 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_de67448da74770cac54c6a6da4a1d355 | p6@Npy1r |
| 2.21e-65 | FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_2aadea9adb6b6a21b99257696ebb8a42 | p1@ENSMUST00000150529 |
| 2.21e-65 | FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_2aadea9adb6b6a21b99257696ebb8a42 | p1@ENSMUST00000150529 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p8@Vit |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_5ee616a84f3c69bdb1f66d3853a1aafc | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_5ee616a84f3c69bdb1f66d3853a1aafc | p@chr10:33816181..33816195, - |
| 4.6e-53 | FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_6894b3c6b57a173d9baae120bdabba7a | p@chr1:110429102..110429103, + |
| 4.6e-53 | FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_6894b3c6b57a173d9baae120bdabba7a | p@chr1:110429102..110429103, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_ca01e09267c5b9f5f9bc4693200b433b | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_ca01e09267c5b9f5f9bc4693200b433b | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_ca01e09267c5b9f5f9bc4693200b433b | p5@Npy1r |
| 4.9e-53 | FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_ca01e09267c5b9f5f9bc4693200b433b | p5@Npy1r |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_ca01e09267c5b9f5f9bc4693200b433b | p4@Il6st |
| 4.9e-53 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_ca01e09267c5b9f5f9bc4693200b433b | p4@Il6st |
| 4.9e-53 | FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_ca01e09267c5b9f5f9bc4693200b433b | p@chr2:113589030..113589077, - |
| 7.35e-53 | FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_35d25449c227a6305bc63b1e218c34a3 | p11@Svep1 |
| 7.35e-53 | FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_35d25449c227a6305bc63b1e218c34a3 | p11@Svep1 |
| 1.1e-52 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_7387b01ad5c544b4d55fd497d92c4e28 | p@chrX:160838787..160838800, + |
| 1.1e-52 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_7387b01ad5c544b4d55fd497d92c4e28 | p@chrX:160838787..160838800, + |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_c65715de265d92e6627c9e8f0e56b31b | p5@Phlda3 |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_c65715de265d92e6627c9e8f0e56b31b | p5@Phlda3 |
| 5.51e-52 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_d07d5583d54a9e7b69d9be8109c1b932 | p@chr2:65009852..65009866, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_d07d5583d54a9e7b69d9be8109c1b932 | p@chr2:65009852..65009866, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_9e09c3c5dde49e4fea855d102b9c0f04 | p@chrX:160838683..160838694, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_467ce85b3818ed17db186aefa99cdd3a | p9@Fgf10 |
| 1.66e-44 | FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_467ce85b3818ed17db186aefa99cdd3a | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_467ce85b3818ed17db186aefa99cdd3a | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_467ce85b3818ed17db186aefa99cdd3a | p9@Fgf10 |
| 2.33e-44 | FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_602376edba57862e6f8b280b814dab53 | p@chr17:75790300..75790304, + |
| 2.33e-44 | FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_602376edba57862e6f8b280b814dab53 | p@chr17:75790300..75790304, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_c83e9ceb5b29aa718664775fb18b8c9f | p9@Gpr39 |
| 3.27e-44 | FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_c83e9ceb5b29aa718664775fb18b8c9f | p9@Gpr39 |
| 4.58e-44 | FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_6710daa5d509c5c1f4dab3e843cdabdb | p@chr17:14813991..14813999, + |
| 4.58e-44 | FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_6710daa5d509c5c1f4dab3e843cdabdb | p@chr17:14813991..14813999, + |
| 8.97e-44 | FFCP PHASE1:Mm9::chr7:91120932..91120938,-#_dc992c973340d8a5b8552ee75dffafb6 | p@chr7:91120932..91120938, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr7:91120932..91120938,-#_dc992c973340d8a5b8552ee75dffafb6 | p@chr7:91120932..91120938, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Involuntary muscle tissue consisting of uninucleate spindle-shaped fibers.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
