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UBERON:0001280

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Name:liver parenchyma
Namespace:FANTOM
Definition:"the functional units of the liver including the lobules." [MP:0008986]
Xrefs:
links:

AAO:0010405
EHDAA2:0001004
EHDAA:2201
EMAPA:17203
FMA:17540
MA:0000366
SCTID:363535004
VHOG:0000539

XAO:0000454
Synonyms: "hepatic parenchyma" EXACT [FMA:17540]
"hepatic parenchyme" RELATED [VHOG:0000539]
"liver parenchyme" EXACT [XAO:0000454]
"parenchyma of liver" EXACT [FMA:17540]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003223
UBERON:FMA_17540-MA_0000366

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000353(parenchyma),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0005171(hepatic duct),UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0002107(liver)



Children

part of:UBERON:0001171 (portal lobule),UBERON:0004647 (liver lobule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001280 (liver parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.74e-88FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
9.74e-88FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117737077..117737096, -
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_103e79e5a3c1e504c4a5bd9b992197fap4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85587155..85587188, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39297570..39297573, -
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:109031260..109031268, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35094068..35094092, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:85547242..85547252, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:45920408..45920437, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93942324..93942342, -

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