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UBERON:0001281

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Name:hepatic sinusoid
Namespace:FANTOM
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA2:0000999
EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium),UBERON:0015796(liver blood vessel)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule),UBERON:0006877(vasculature of liver)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:116223548..116223551, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113053257..113053258, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_6fce5d17c2d4fcdd0dfb645df56d5240p6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:137570295..137570315, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113550715..113550722, -
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_6fce5d17c2d4fcdd0dfb645df56d5240p6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223779..109223789, -

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