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UBERON:0001281

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Name:hepatic sinusoid
Namespace:FANTOM
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA2:0000999
EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium),UBERON:0015796(liver blood vessel)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule),UBERON:0006877(vasculature of liver)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82209805..82209851, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113550715..113550722, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_6fce5d17c2d4fcdd0dfb645df56d5240p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:93499468..93499494,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Pag1

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