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UBERON:0001441

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Name:hindlimb skeleton
Namespace:FANTOM
Definition:"The collection of all skeletal elements in an hindlimb region." [UBERON:cjm]
Xrefs:
links:

AAO:0000217
EHDAA2:0002226
FMA:24144
OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
VHOG:0001255
VSAO:0000152

XAO:0003062
Synonyms: "bones of lower limb" EXACT []
"hind limb skeleton" EXACT [XAO:0003062]
"hindlimb skeleton" EXACT [VHOG:0001255]
"lower limb skeleton" EXACT []
"ossa membri inferioris" EXACT [FMA:24140, FMA:TA]
"set of bones of lower limb" EXACT []
"skeleton of lower limb" EXACT [FMA:24140]
Comments:TOOD - find a home for: FMA:24140
Alt_id: UBERON:FMA_24140-MA_0000670
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004381(skeleton of limb),UBERON:0007273(pelvic appendage skeleton)
part_of:UBERON:0002103(hindlimb),UBERON:0012476(skeleton of pelvic complex)



Children

part of:UBERON:0000981 (femur),UBERON:0003464 (hindlimb bone),UBERON:0010885 (hindlimb cartilage element),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0015022 (hindlimb endochondral element),UBERON:0015052 (femur endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001441 (hindlimb skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_2a22346320884e386d61364af66cbb55p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_2a22346320884e386d61364af66cbb55p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_56770795c72eae1f32f3bd9827d95810p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_56770795c72eae1f32f3bd9827d95810p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_56770795c72eae1f32f3bd9827d95810p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_56770795c72eae1f32f3bd9827d95810p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_56770795c72eae1f32f3bd9827d95810p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_56770795c72eae1f32f3bd9827d95810p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_47a68d1f32a9159b124729fa4b70e416p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_47a68d1f32a9159b124729fa4b70e416p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6c8d777d1c9363b6edd1b600fe2e385ep@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6c8d777d1c9363b6edd1b600fe2e385ep@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_5d7ebb189cb574653963a4796def5deep@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_5d7ebb189cb574653963a4796def5deep@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_5d7ebb189cb574653963a4796def5deep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_5d7ebb189cb574653963a4796def5deep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_5d7ebb189cb574653963a4796def5deep@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_5d7ebb189cb574653963a4796def5deep@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_5d7ebb189cb574653963a4796def5deep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_5d7ebb189cb574653963a4796def5deep@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_40db5edd8c28bbead90d6c9ce31a2b80p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_40db5edd8c28bbead90d6c9ce31a2b80p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_0290f1f3535f6f3a5dcfd00baf02b2f9p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_0290f1f3535f6f3a5dcfd00baf02b2f9p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_f9f226a14251eadebb08df0db53a9009p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_f9f226a14251eadebb08df0db53a9009p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_5adc266d23b4e87e46e4e5a58f60acc1p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_5adc266d23b4e87e46e4e5a58f60acc1p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_a9415a81a177d1bc802071b5c8fb3447p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_a9415a81a177d1bc802071b5c8fb3447p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_72ae81de20e05ddc4deb8559275f60edp2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_72ae81de20e05ddc4deb8559275f60edp2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_910853a2dc4d8ca6b71a44baefa81be9p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_910853a2dc4d8ca6b71a44baefa81be9p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_5aa1dff8314bb40e495a893d988fbd8fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_5aa1dff8314bb40e495a893d988fbd8fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_5aa1dff8314bb40e495a893d988fbd8fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_5aa1dff8314bb40e495a893d988fbd8fp@chr1:166815111..166815121, -
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_d67465a61a88a2ada28ba667c567adc1p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_d67465a61a88a2ada28ba667c567adc1p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_d67465a61a88a2ada28ba667c567adc1p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_d67465a61a88a2ada28ba667c567adc1p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_e9d2cf08ef08b11a3833f3b3493d81f5p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_e9d2cf08ef08b11a3833f3b3493d81f5p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_57ec37625730cf4fc94e246aee06f594p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_57ec37625730cf4fc94e246aee06f594p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_57ec37625730cf4fc94e246aee06f594p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_57ec37625730cf4fc94e246aee06f594p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_8f7adaf7b4f548ad3fa95a7ae6a4500ep@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_8f7adaf7b4f548ad3fa95a7ae6a4500ep@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_ba3cc471641f29eb9d82e4ac9c618a00p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_ba3cc471641f29eb9d82e4ac9c618a00p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_ba3cc471641f29eb9d82e4ac9c618a00p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_ba3cc471641f29eb9d82e4ac9c618a00p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_0781977407e6ff0b26a4af86e0380879p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_0781977407e6ff0b26a4af86e0380879p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_1e26f87a2157f2749da867f12bb54f1ep2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_1e26f87a2157f2749da867f12bb54f1ep2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_16e25b8c925263edf1c37d56868adfb4p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_16e25b8c925263edf1c37d56868adfb4p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_5514e6fd44d59a6aa614779f67b8fed0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_5514e6fd44d59a6aa614779f67b8fed0p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_0e95b5d8513d0ab1d04b03b7d2e41e00p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_0e95b5d8513d0ab1d04b03b7d2e41e00p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_0e95b5d8513d0ab1d04b03b7d2e41e00p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_0e95b5d8513d0ab1d04b03b7d2e41e00p1@Msmp
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chrY:2858251..2858257, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_50aa259db35f19f74c62ed209c3508d4p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_50aa259db35f19f74c62ed209c3508d4p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_61d2f1f8b0f396d868e56de447642954p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_61d2f1f8b0f396d868e56de447642954p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_06ebca357591b31f99dcb17332d03fe9p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_06ebca357591b31f99dcb17332d03fe9p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_d5f2d4858b2146787b6436e9673ade20p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_d5f2d4858b2146787b6436e9673ade20p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_5f94bb8a4e983eb53f9f11886a6db318p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_5f94bb8a4e983eb53f9f11886a6db318p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_99fe624fa4d704f1b6dabe1bc189d78fp7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_99fe624fa4d704f1b6dabe1bc189d78fp7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_f793a6ce470bd3f734d771245c345878p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_f793a6ce470bd3f734d771245c345878p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_f793a6ce470bd3f734d771245c345878p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_f793a6ce470bd3f734d771245c345878p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_22c1f26027e4eb01ee4d49a765b59c77p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_22c1f26027e4eb01ee4d49a765b59c77p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_e2e0c475d188f56bb4d06ac8dc933549p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_e2e0c475d188f56bb4d06ac8dc933549p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_467e029881145a40e56e5a315296c18ap@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_467e029881145a40e56e5a315296c18ap2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_467e029881145a40e56e5a315296c18ap2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_467e029881145a40e56e5a315296c18ap@chr12:81581216..81581231, +
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_51cbee31edf7ebeeda70136a7cdafbb0p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_51cbee31edf7ebeeda70136a7cdafbb0p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_51cbee31edf7ebeeda70136a7cdafbb0p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_51cbee31edf7ebeeda70136a7cdafbb0p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_db9d18fd3f55d296af157af00091deb0p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_db9d18fd3f55d296af157af00091deb0p2@Siglec15










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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