UBERON:0001557

Name:	upper respiratory tract
Namespace:	FANTOM
Definition:	"Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
Xrefs:	Expandlinks: EHDAA2:0002136 EMAPA:17669 FMA:45661 [1] [2] MA:0000442 OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ SCTID:361381009 VHOG:0000406
Comments:	This class was created automatically from a combination of ontologies
Alt_id:	UBERON:FMA_45661-MA_0000442
Subset:	uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000072(segment of respiratory tract)

Children

part of:	UBERON:0001707 (nasal cavity),UBERON:0004814 (upper respiratory tract epithelium),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10275-104E5
• 10303-104H6
• 10331-105B7
• 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
• 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
• 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
• 11893-125E3
• 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
• 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
• 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001557 (upper respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
1.04e-92	FFCP PHASE1:Hg19::chr2:233246793..233246841,-	p1@ENST00000441266
1.04e-92	FFCP PHASE2:Hg19::chr17:79098633..79098647,-	p@chr17:79098633..79098647, -
1.04e-92	FFCP PHASE2:Hg19::chr2:233246459..233246472,+	p9@ALPP
1.04e-92	FFCP PHASE1:Hg19::chr2:233246459..233246472,+	p9@ALPP
1.04e-92	FFCP PHASE1:Hg19::chr2:233246932..233246943,+	p6@ALPP
1.04e-92	FFCP PHASE2:Hg19::chr2:233244473..233244503,+	p1@AK297894
1.04e-92	FFCP PHASE1:Hg19::chr17:79098633..79098647,-	p@chr17:79098633..79098647, -
1.04e-92	FFCP PHASE2:Hg19::chr2:233244912..233244922,+	p2@AK297894
1.04e-92	FFCP PHASE2:Hg19::chr16:87869864..87869878,+	p@chr16:87869864..87869878, +
1.04e-92	FFCP PHASE1:Hg19::chr8:128241234..128241241,-	p7@uc003ysb.2
1.04e-92	FFCP PHASE1:Hg19::chr16:87869864..87869878,+	p@chr16:87869864..87869878, +
1.04e-92	FFCP PHASE2:Hg19::chr2:53732986..53732989,-	p@chr2:53732986..53732989, -
1.04e-92	FFCP PHASE2:Hg19::chr2:233246932..233246943,+	p6@ALPP
1.04e-92	FFCP PHASE1:Hg19::chr2:233244912..233244922,+	p2@AK297894
1.04e-92	FFCP PHASE1:Hg19::chr2:53732986..53732989,-	p@chr2:53732986..53732989, -
1.04e-92	FFCP PHASE2:Hg19::chr8:128241234..128241241,-	p7@uc003ysb.2
1.04e-92	FFCP PHASE2:Hg19::chr2:233246793..233246841,-	p1@ENST00000441266
1.04e-92	FFCP PHASE1:Hg19::chr2:233244473..233244503,+	p1@AK297894
1.52e-83	FFCP PHASE1:Hg19::chr4:134184041..134184064,-	p2@ENST00000507172
1.52e-83	FFCP PHASE2:Hg19::chrX:86868675..86868686,+	p@chrX:86868675..86868686, +
1.52e-83	FFCP PHASE2:Hg19::chr4:123838984..123838995,-	p@chr4:123838984..123838995, -
1.52e-83	FFCP PHASE2:Hg19::chr7:54879838..54879849,-	p@chr7:54879838..54879849, -
1.52e-83	FFCP PHASE2:Hg19::chr8:128265552..128265583,-	p@chr8:128265552..128265583, -
1.52e-83	FFCP PHASE1:Hg19::chr2:233246656..233246666,+	p8@ALPP
1.52e-83	FFCP PHASE1:Hg19::chr8:128265552..128265583,-	p@chr8:128265552..128265583, -
1.52e-83	FFCP PHASE2:Hg19::chr4:134184041..134184064,-	p2@ENST00000507172
1.52e-83	FFCP PHASE1:Hg19::chrX:86868675..86868686,+	p@chrX:86868675..86868686, +
1.52e-83	FFCP PHASE1:Hg19::chr4:123838984..123838995,-	p@chr4:123838984..123838995, -
1.52e-83	FFCP PHASE1:Hg19::chr7:54879838..54879849,-	p@chr7:54879838..54879849, -
1.52e-83	FFCP PHASE2:Hg19::chr2:233246656..233246666,+	p8@ALPP
1.67e-83	FFCP PHASE2:Hg19::chr2:233246988..233246995,+	p@chr2:233246988..233246995, +
1.67e-83	FFCP PHASE1:Hg19::chr2:233246988..233246995,+	p@chr2:233246988..233246995, +
3.6e-83	FFCP PHASE1:Hg19::chr8:128269736..128269748,-	p@chr8:128269736..128269748, -
3.6e-83	FFCP PHASE1:Hg19::chr8:128270857..128270869,-	p@chr8:128270857..128270869, -
3.6e-83	FFCP PHASE2:Hg19::chr8:128269736..128269748,-	p@chr8:128269736..128269748, -
3.6e-83	FFCP PHASE2:Hg19::chr19:3603296..3603307,+	p@chr19:3603296..3603307, +
3.6e-83	FFCP PHASE1:Hg19::chr19:3603296..3603307,+	p@chr19:3603296..3603307, +
3.6e-83	FFCP PHASE2:Hg19::chr8:128270857..128270869,-	p@chr8:128270857..128270869, -
3.6e-83	FFCP PHASE2:Hg19::chr8:128270240..128270252,-	p@chr8:128270240..128270252, -
3.6e-83	FFCP PHASE1:Hg19::chr8:128270240..128270252,-	p@chr8:128270240..128270252, -
1.46e-82	FFCP PHASE2:Hg19::chr4:134183951..134183960,-	p4@ENST00000507172
1.46e-82	FFCP PHASE1:Hg19::chr4:134183951..134183960,-	p4@ENST00000507172
4.83e-76	FFCP PHASE2:Hg19::chr2:233243233..233243245,+	p5@ALPP
4.83e-76	FFCP PHASE1:Hg19::chr1:207262293..207262306,+	p17@C4BPB
4.83e-76	FFCP PHASE2:Hg19::chr1:207262293..207262306,+	p17@C4BPB
4.83e-76	FFCP PHASE1:Hg19::chr11:3147806..3147811,-	p7@OSBPL5
4.83e-76	FFCP PHASE2:Hg19::chr11:3147806..3147811,-	p7@OSBPL5
4.83e-76	FFCP PHASE1:Hg19::chr2:233243233..233243245,+	p5@ALPP
6.84e-76	FFCP PHASE2:Hg19::chr11:4154830..4154835,+	p@chr11:4154830..4154835, +
6.84e-76	FFCP PHASE1:Hg19::chr11:4154830..4154835,+	p@chr11:4154830..4154835, +
8.88e-76	FFCP PHASE2:Hg19::chr8:128433201..128433228,-	p1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
8.88e-76	FFCP PHASE1:Hg19::chr8:128433201..128433228,-	p1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
1.06e-75	FFCP PHASE1:Hg19::chr8:128270900..128270912,-	p@chr8:128270900..128270912, -
1.06e-75	FFCP PHASE2:Hg19::chr8:128270900..128270912,-	p@chr8:128270900..128270912, -
1.15e-75	FFCP PHASE2:Hg19::chr4:173884019..173884038,+	p@chr4:173884019..173884038, +
1.15e-75	FFCP PHASE1:Hg19::chr4:173884019..173884038,+	p@chr4:173884019..173884038, +
1.37e-75	FFCP PHASE1:Hg19::chr4:173883984..173884005,+	p@chr4:173883984..173884005, +
1.37e-75	FFCP PHASE2:Hg19::chr4:173883984..173884005,+	p@chr4:173883984..173884005, +
1.78e-75	FFCP PHASE2:Hg19::chr2:10529417..10529422,+	p@chr2:10529417..10529422, +
1.78e-75	FFCP PHASE1:Hg19::chr2:10529417..10529422,+	p@chr2:10529417..10529422, +
1.2e-73	FFCP PHASE1:Hg19::chr8:128231737..128231742,-	p14@ENST00000500112, p14@uc003ysa.1
1.2e-73	FFCP PHASE2:Hg19::chr8:128231737..128231742,-	p14@ENST00000500112, p14@uc003ysa.1
1.3e-73	FFCP PHASE1:Hg19::chr8:143782507..143782516,+	p@chr8:143782507..143782516, +
1.3e-73	FFCP PHASE2:Hg19::chr8:143782507..143782516,+	p@chr8:143782507..143782516, +
1.92e-73	FFCP PHASE2:Hg19::chr2:233246589..233246598,+	p12@ALPP
1.92e-73	FFCP PHASE1:Hg19::chr2:233246589..233246598,+	p12@ALPP
2.11e-73	FFCP PHASE2:Hg19::chr16:87874486..87874492,-	p@chr16:87874486..87874492, -
2.11e-73	FFCP PHASE1:Hg19::chr16:87874486..87874492,-	p@chr16:87874486..87874492, -
3.12e-73	FFCP PHASE2:Hg19::chr2:234590530..234590553,+	p1@UGT1A7
3.12e-73	FFCP PHASE1:Hg19::chr2:234590530..234590553,+	p1@UGT1A7
3.71e-73	FFCP PHASE2:Hg19::chr5:370156..370169,+	p@chr5:370156..370169, +
3.71e-73	FFCP PHASE1:Hg19::chr5:370156..370169,+	p@chr5:370156..370169, +
3.71e-73	FFCP PHASE1:Hg19::chr8:128270948..128270958,-	p@chr8:128270948..128270958, -
3.71e-73	FFCP PHASE2:Hg19::chr8:128270948..128270958,-	p@chr8:128270948..128270958, -
1.97e-72	FFCP PHASE2:Hg19::chr16:87869840..87869849,+	p@chr16:87869840..87869849, +
1.97e-72	FFCP PHASE2:Hg19::chr9:84380797..84380800,+	p@chr9:84380797..84380800, +
1.97e-72	FFCP PHASE1:Hg19::chr2:233246442..233246451,+	p16@ALPP
1.97e-72	FFCP PHASE1:Hg19::chr16:87869840..87869849,+	p@chr16:87869840..87869849, +
1.97e-72	FFCP PHASE2:Hg19::chr2:233246442..233246451,+	p16@ALPP
1.97e-72	FFCP PHASE1:Hg19::chr9:84380797..84380800,+	p@chr9:84380797..84380800, +
8.65e-70	FFCP PHASE1:Hg19::chr17:9745568..9745583,+	p8@GLP2R
8.65e-70	FFCP PHASE2:Hg19::chr2:233246828..233246839,+	p4@ALPP
8.65e-70	FFCP PHASE2:Hg19::chr5:147582537..147582549,+	p4@SPINK6
8.65e-70	FFCP PHASE2:Hg19::chr2:233243964..233243976,+	p@chr2:233243964..233243976, +
8.65e-70	FFCP PHASE1:Hg19::chr2:233246828..233246839,+	p4@ALPP
8.65e-70	FFCP PHASE1:Hg19::chr4:134076121..134076131,+	p15@PCDH10
8.65e-70	FFCP PHASE1:Hg19::chr5:147582537..147582549,+	p4@SPINK6
8.65e-70	FFCP PHASE2:Hg19::chr4:134076121..134076131,+	p15@PCDH10
8.65e-70	FFCP PHASE2:Hg19::chr17:9745568..9745583,+	p8@GLP2R
8.65e-70	FFCP PHASE1:Hg19::chr2:233243964..233243976,+	p@chr2:233243964..233243976, +
9.37e-70	FFCP PHASE1:Hg19::chr8:128231456..128231465,-	p13@ENST00000500112, p13@uc003ysa.1
9.37e-70	FFCP PHASE2:Hg19::chr8:128231456..128231465,-	p13@ENST00000500112, p13@uc003ysa.1
1.02e-69	FFCP PHASE2:Hg19::chr1:207262478..207262493,+	p14@C4BPB
1.02e-69	FFCP PHASE1:Hg19::chr1:207262478..207262493,+	p14@C4BPB
1.29e-69	FFCP PHASE2:Hg19::chr2:233324211..233324229,-	p@chr2:233324211..233324229, -
1.29e-69	FFCP PHASE1:Hg19::chr2:233324211..233324229,-	p@chr2:233324211..233324229, -
1.29e-69	FFCP PHASE2:Hg19::chr2:233321333..233321358,+	p@chr2:233321333..233321358, +
1.29e-69	FFCP PHASE1:Hg19::chr2:233321333..233321358,+	p@chr2:233321333..233321358, +
1.4e-69	FFCP PHASE1:Hg19::chr2:211427642..211427670,+	p@chr2:211427642..211427670, +
1.4e-69	FFCP PHASE2:Hg19::chr2:211427642..211427670,+	p@chr2:211427642..211427670, +

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