Personal tools

UBERON:0001737

From FANTOM5_SSTAR

Jump to: navigation, search

Name:larynx
Namespace:FANTOM
Definition:"Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx]
Xrefs:
links:

AAO:0000268
BTO:0001208
EFO:0000838
EHDAA2:0004063
EMAPA:18333
EV:0100039
FMA:55097
GAID:108
galen:Larynx
[1]
MA:0000414
MAT:0000187
MESH:A.04.329
MIAA:0000187
ncithesaurus:Larynx
OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA
SCTID:181212004
VHOG:0001279

XAO:0003081
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008947(respiratory primordium)
part_of:UBERON:0000065(respiratory tract)



Children

derives from:FF:0104978 (HEp-2 cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
  • 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
  • 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
  • 11893-125E3
  • 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
  • 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
  • 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
  • 11897-125E7
  • 11898-125E8 (Hep-2 cells mock treated, biol_rep1)
  • 11899-125E9 (Hep-2 cells mock treated, biol_rep2)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001737 (larynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.