UBERON:0001873
From FANTOM5_SSTAR
| Name: | caudate nucleus | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] | |
| Xrefs: |
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| Synonyms: |
"caudatus" EXACT [] "nucleus caudatus" RELATED [BTO:0000211] "nucleus caudatus" RELATED LATIN [Wikipedia:Caudate_nucleus] | |
| Comments: | CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | |
| Alt_id: | UBERON:FMA_61833-MA_0000894 | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009663(telencephalic nucleus) |
|---|---|
| develops_from: | UBERON:0010122(future caudate nucleus) |
| part_of: | UBERON:0000369(corpus striatum),UBERON:0002435(striatum),UBERON:0005382(dorsal striatum),UBERON:0005383(caudate-putamen) |
Children
| is a: | FF:10354-105E3 (caudate nucleus, newborn, donor10223) |
|---|---|
| derives from: | FF:0010164 (human caudate nucleus - adult donor sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001873 (caudate nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
