UBERON:0001890
From FANTOM5_SSTAR
| Name: | forebrain | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The most anterior region the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576] | ||
| Xrefs: |
| ||
| Synonyms: | "prosencephalon" RELATED [] | ||
| Alt_id: | UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-EmbryonicBrain.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002616(regional part of brain) |
|---|---|
| develops_from: | UBERON:0003080(anterior neural tube) |
| part_of: | UBERON:0000955(brain) |
Children
| part of: | UBERON:0000349 (limbic system),UBERON:0001893 (telencephalon),UBERON:0001894 (diencephalon),UBERON:0002743 (basal forebrain),UBERON:0002780 (regional part of forebrain),CL:0012000 (astrocyte of the forebrain),CL:0012001 (neuron of the forebrain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10042-101F6 (corpus callosum, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10042-101F6 (corpus callosum, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001890 (forebrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.11e-141 | FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_94cd2af3fd8ff13070818ea469ec6d6f | p@chr5:89977201..89977236, + |
| 6.11e-141 | FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_94cd2af3fd8ff13070818ea469ec6d6f | p@chr5:89977201..89977236, + |
| 2.38e-133 | FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5179aa79c58bb22cf09b237550ddeb84 | p5@ST8SIA3 |
| 2.38e-133 | FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5179aa79c58bb22cf09b237550ddeb84 | p5@ST8SIA3 |
| 6.8e-130 | FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_4543763bc1f50216d743b17a1a5467eb | p5@PHACTR1 |
| 6.8e-130 | FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_4543763bc1f50216d743b17a1a5467eb | p5@PHACTR1 |
| 2.27e-128 | FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_f1d7b0f716b259f23c854703f5c1749d | p3@PHACTR1 |
| 2.27e-128 | FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_f1d7b0f716b259f23c854703f5c1749d | p3@PHACTR1 |
| 6.39e-128 | FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_126d169843e22e2b0ffdb27d4a503619 | p6@PSD |
| 6.39e-128 | FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_126d169843e22e2b0ffdb27d4a503619 | p6@PSD |
| 7.77e-125 | FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_8a1f58d59e3ee0f642acb97c6d76a22d | p@chr20:61806320..61806344, + |
| 7.77e-125 | FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_8a1f58d59e3ee0f642acb97c6d76a22d | p@chr20:61806320..61806344, + |
| 3.82e-123 | FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_a06d906e2df5184083362ed310a554b7 | p2@FXYD7 |
| 3.82e-123 | FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_a06d906e2df5184083362ed310a554b7 | p2@FXYD7 |
| 1.09e-121 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_f5a877c65af8112c29624310cdce1247 | p1@NR2E1 |
| 1.09e-121 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_f5a877c65af8112c29624310cdce1247 | p1@NR2E1 |
| 2.87e-118 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_b2d8ab7d57eb2467d591f172d3db2854 | p5@OPCML |
| 2.87e-118 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_b2d8ab7d57eb2467d591f172d3db2854 | p5@OPCML |
| 7.25e-118 | FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_c899bb3ccc00de687e8e0128314cac95 | p4@DPP6 |
| 7.25e-118 | FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_c899bb3ccc00de687e8e0128314cac95 | p4@DPP6 |
| 8.87e-118 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_e3e01c6143bf3662e17f99be47dffcad | p9@GPM6B |
| 8.87e-118 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_e3e01c6143bf3662e17f99be47dffcad | p9@GPM6B |
| 1.66e-117 | FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c9c936c6544958c3e44c1f974d3a4ae0 | p@chr4:6514469..6514483, - |
| 1.66e-117 | FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c9c936c6544958c3e44c1f974d3a4ae0 | p@chr4:6514469..6514483, - |
| 2.75e-117 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_17d4fdd5db55b09b88d7912784db153a | p3@GRIN2B |
| 2.75e-117 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_17d4fdd5db55b09b88d7912784db153a | p3@GRIN2B |
| 2.82e-116 | FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_108ee19174f3164e68b547a19c2ff1df | p4@PHACTR1 |
| 2.82e-116 | FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_108ee19174f3164e68b547a19c2ff1df | p4@PHACTR1 |
| 2.93e-116 | FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_9c8cd4f547f775eb9a54a14b41d85764 | p8@RIMS2 |
| 2.93e-116 | FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_9c8cd4f547f775eb9a54a14b41d85764 | p8@RIMS2 |
| 5.58e-116 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_b31b9625b83bcbb6468d3e57562352ca | p8@LRRC7 |
| 5.58e-116 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_b31b9625b83bcbb6468d3e57562352ca | p8@LRRC7 |
| 6.52e-116 | FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_ced2266ed38ac546f0dec71ca7d2afcb | p4@DLGAP3 |
| 6.52e-116 | FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_ced2266ed38ac546f0dec71ca7d2afcb | p4@DLGAP3 |
| 6.61e-116 | FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_fa9942a876f8e490311ef5f5d39c56f0 | p8@PHACTR1 |
| 6.61e-116 | FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_fa9942a876f8e490311ef5f5d39c56f0 | p8@PHACTR1 |
| 5.28e-115 | FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_7a446cb699bf77de2f5d4d25126f9424 | p3@DOCK4 |
| 5.28e-115 | FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_7a446cb699bf77de2f5d4d25126f9424 | p3@DOCK4 |
| 5.97e-115 | FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_0baaf265f75f8e1c98a0c25ad92be58e | p3@GPR98 |
| 5.97e-115 | FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_0baaf265f75f8e1c98a0c25ad92be58e | p3@GPR98 |
| 1.02e-114 | FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_4acb237037472e4b2b6136ca21c6343a | p2@DLGAP3 |
| 1.02e-114 | FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_4acb237037472e4b2b6136ca21c6343a | p2@DLGAP3 |
| 1.06e-114 | FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_20e69dd2bfc329bff1a4076c5d68cccc | p5@MKL2 |
| 1.06e-114 | FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_20e69dd2bfc329bff1a4076c5d68cccc | p5@MKL2 |
| 8.42e-114 | FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_56a4aa966986522fdab1987de040c0dc | p1@uc003ppd.1 |
| 8.42e-114 | FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_56a4aa966986522fdab1987de040c0dc | p1@uc003ppd.1 |
| 3.53e-113 | FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_5680f39f2b76d0d03f515ae073dd9ef0 | p@chr1:70035018..70035044, + |
| 3.53e-113 | FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_5680f39f2b76d0d03f515ae073dd9ef0 | p@chr1:70035018..70035044, + |
| 5.22e-113 | FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_e2ccbe849602839002dcf31307da66e3 | p6@GABRA2 |
| 5.22e-113 | FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_e2ccbe849602839002dcf31307da66e3 | p6@GABRA2 |
| 5.23e-113 | FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_75c515cc2d90e7cd15c05316145389e8 | p6@CIT |
| 5.23e-113 | FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_75c515cc2d90e7cd15c05316145389e8 | p6@CIT |
| 1.08e-112 | FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_ff8f0888f30f5c1bce442c8bd42fcdd3 | p2@LMTK3 |
| 1.08e-112 | FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_ff8f0888f30f5c1bce442c8bd42fcdd3 | p2@LMTK3 |
| 1.26e-112 | FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_1d320c017f26f0b9021cabb7956894c7 | p10@GPM6B |
| 1.26e-112 | FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_1d320c017f26f0b9021cabb7956894c7 | p10@GPM6B |
| 1.39e-112 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_a12b9152f9acabcb2361914bf5c2a9aa | p@chr5:80255907..80255942, + |
| 1.39e-112 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_a12b9152f9acabcb2361914bf5c2a9aa | p@chr5:80255907..80255942, + |
| 1.42e-112 | FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_a2eee95743da5fc9441d554c87295542 | p@chr17:61194578..61194599, + |
| 1.42e-112 | FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_a2eee95743da5fc9441d554c87295542 | p@chr17:61194578..61194599, + |
| 1.66e-112 | FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_1b7b461f360e8fbd581304617f1626e8 | p@chr5:89977181..89977199, + |
| 1.66e-112 | FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_1b7b461f360e8fbd581304617f1626e8 | p@chr5:89977181..89977199, + |
| 6.89e-112 | FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_053028ba11e81f2bf62e41e830dec087 | p1@ENST00000417881 |
| 6.89e-112 | FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_053028ba11e81f2bf62e41e830dec087 | p1@ENST00000417881 |
| 7.85e-112 | FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_42cdff334b3b0591d0ee33c5bf787cb5 | p6@DPP6 |
| 7.85e-112 | FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_42cdff334b3b0591d0ee33c5bf787cb5 | p6@DPP6 |
| 1.02e-111 | FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_4634d65504b62a95ff9e43e8e4d9fa28 | p2@CDH9 |
| 1.02e-111 | FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_4634d65504b62a95ff9e43e8e4d9fa28 | p2@CDH9 |
| 1.42e-111 | FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_d66ba86d8b01aaa7090ae9bc151ebdc4 | p@chr2:3134361..3134374, - |
| 1.42e-111 | FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_d66ba86d8b01aaa7090ae9bc151ebdc4 | p@chr2:3134361..3134374, - |
| 1.94e-111 | FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_366de2ebf1779ee817f258896664cb30 | p3@TIAM2 |
| 1.94e-111 | FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_366de2ebf1779ee817f258896664cb30 | p3@TIAM2 |
| 3.18e-111 | FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_756ce8f16ed31abbb4008f5376b8474c | p1@KALRN |
| 3.18e-111 | FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_756ce8f16ed31abbb4008f5376b8474c | p1@KALRN |
| 4.18e-111 | FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_1880b318aaec5246890595f3aba3daca | p4@ASTN1 |
| 4.18e-111 | FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_1880b318aaec5246890595f3aba3daca | p4@ASTN1 |
| 5.69e-111 | FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_43507fb9fd41a656ceb98067e309685a | p@chr11:132982177..132982181, - |
| 5.69e-111 | FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_43507fb9fd41a656ceb98067e309685a | p@chr11:132982177..132982181, - |
| 7.54e-111 | FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_c507736394ce9a811d3275aae70297b3 | p5@NKAIN3 |
| 7.54e-111 | FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_c507736394ce9a811d3275aae70297b3 | p5@NKAIN3 |
| 1.27e-110 | FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_91c7bf141eaeef6badb0de1bab0c0061 | p9@ANKS1B |
| 1.27e-110 | FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_91c7bf141eaeef6badb0de1bab0c0061 | p9@ANKS1B |
| 1.38e-110 | FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_8adfb93598208a709fe9569bbe832849 | p3@ARNT2 |
| 1.38e-110 | FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_8adfb93598208a709fe9569bbe832849 | p3@ARNT2 |
| 2.12e-110 | FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_7fa1b54933033dbe7535ad27d4a42130 | p@chr20:1791316..1791339, - |
| 2.12e-110 | FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_7fa1b54933033dbe7535ad27d4a42130 | p@chr20:1791316..1791339, - |
| 2.27e-110 | FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_a07095518d3e2d5fc2f459c7abff4bbd | p14@PALM2-AKAP2 |
| 2.27e-110 | FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_a07095518d3e2d5fc2f459c7abff4bbd | p14@PALM2-AKAP2 |
| 3.45e-110 | FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_4b201cb5dcee30786f9749ee7860da76 | p6@GPM6B |
| 3.45e-110 | FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_4b201cb5dcee30786f9749ee7860da76 | p6@GPM6B |
| 4.23e-110 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_8428790c292dc7dc894035ccaea79d11 | p1@ENST00000412957 |
| 4.23e-110 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_8428790c292dc7dc894035ccaea79d11 | p1@ENST00000412957 |
| 5.12e-110 | FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_426cb6c23d50ac983c41943e9051080a | p7@ANKS1B |
| 5.12e-110 | FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_426cb6c23d50ac983c41943e9051080a | p7@ANKS1B |
| 7.19e-110 | FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_1887cfc1535600c68e705bfa82937df1 | p@chr20:1791288..1791304, - |
| 7.19e-110 | FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_1887cfc1535600c68e705bfa82937df1 | p@chr20:1791288..1791304, - |
| 9.49e-110 | FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_43a3c02d5372ddb5352ba1ad52fa26b2 | p@chr21:43917145..43917190, - |
| 9.49e-110 | FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_43a3c02d5372ddb5352ba1ad52fa26b2 | p@chr21:43917145..43917190, - |
| 1.01e-109 | FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_38f79f7871dbed7edd1cd3dd2edea05c | p2@TIAM2 |
| 1.01e-109 | FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_38f79f7871dbed7edd1cd3dd2edea05c | p2@TIAM2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
