UBERON:0001954
From FANTOM5_SSTAR
Name: | Ammon's horn | ||
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Namespace: | FANTOM | ||
Definition: | "A paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube[WP]." [Wikipedia:Hippocampus] | ||
Xrefs: |
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Synonyms: |
"ammon gyrus" EXACT [GO:0021541] "ammon horn" EXACT [NIF_GrossAnatomy:birnlex_721] "Ammon's horn" EXACT [GO:0021541] "cornu ammonis" RELATED [GO:0021541] "hippocampus" RELATED [MA:0000191] "hippocampus major" EXACT [] "hippocampus proper" EXACT [] "hippocampus proprius" EXACT [FMA:62493, FMA:TA] | ||
Comments: | WP: Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish.[82] The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the "avian hippocampus". The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa.[86] One of the consequences of this is that the medial pallium ("hippocampal" zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming "cognitive maps" of the areas they inhabit.[80] There is evidence that damage to the lateral pallium impairs spatial memory. | ||
Alt_id: |
UBERON:0003940 UBERON:0004165 UBERON:FMA_62493-MA_0000191-MIAA_0000114 | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002791(regional part of telencephalon) |
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part_of: | UBERON:0000349(limbic system),UBERON:0002421(hippocampal formation),UBERON:0002600(limbic lobe) |
Children
is a: | FF:10363-105F3 (hippocampus, newborn, donor10223),FF:13-16E8 (hippocampus, adult) |
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derives from: | FF:0010153 (hippocampus - adult sample),FF:0011391 (mouse hippocampus- neonate N00 sample) |
part of: | FF:0000197 (mouse astrocyte of hippocampus sample),CL:0002604 (astrocyte of the hippocampus),CL:0002608 (hippocampal neuron),FF:0010153 (hippocampus - adult sample),CL:1001580 (hippocampus glial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10169-103B7 (hippocampus - adult, donor10196)
- 10363-105F3 (hippocampus, newborn, donor10223)
- 10374-105G5 (hippocampus, adult, donor10258)
- 11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
- 11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
... further results Mouse (Mus musculus)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10169-103B7 (hippocampus - adult, donor10196)
- 10363-105F3 (hippocampus, newborn, donor10223)
- 10374-105G5 (hippocampus, adult, donor10258)
- 11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
- 11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001954 (Ammon's horn), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.68e-99 | FFCP PHASE2:Hg19::chr2:149881275..149881284,+#_4ee7a82146d3b0b0cde75c44aef3e8ae | p@chr2:149881275..149881284, + |
5.68e-99 | FFCP PHASE2:Hg19::chrX:148561320..148561329,-#_4ee7a82146d3b0b0cde75c44aef3e8ae | p@chrX:148561320..148561329, - |
5.68e-99 | FFCP PHASE1:Hg19::chr2:149881275..149881284,+#_4ee7a82146d3b0b0cde75c44aef3e8ae | p@chr2:149881275..149881284, + |
5.68e-99 | FFCP PHASE1:Hg19::chrX:148561320..148561329,-#_4ee7a82146d3b0b0cde75c44aef3e8ae | p@chrX:148561320..148561329, - |
1.55e-98 | FFCP PHASE2:Hg19::chr6:132937900..132937907,-#_11688ec4cf6e7d67f5e340ad91f1184a | p@chr6:132937900..132937907, - |
1.55e-98 | FFCP PHASE2:Hg19::chrX:110464144..110464149,+#_11688ec4cf6e7d67f5e340ad91f1184a | p@chrX:110464144..110464149, + |
1.55e-98 | FFCP PHASE1:Hg19::chr2:187628574..187628585,+#_11688ec4cf6e7d67f5e340ad91f1184a | p@chr2:187628574..187628585, + |
1.55e-98 | FFCP PHASE1:Hg19::chrX:110464144..110464149,+#_11688ec4cf6e7d67f5e340ad91f1184a | p@chrX:110464144..110464149, + |
1.55e-98 | FFCP PHASE2:Hg19::chr2:187628574..187628585,+#_11688ec4cf6e7d67f5e340ad91f1184a | p@chr2:187628574..187628585, + |
1.55e-98 | FFCP PHASE1:Hg19::chr6:132937900..132937907,-#_11688ec4cf6e7d67f5e340ad91f1184a | p@chr6:132937900..132937907, - |
4.22e-98 | FFCP PHASE2:Hg19::chr5:119669127..119669137,-#_172d5d52d3c336c8079c7e446836e880 | p4@ENST00000514240 |
4.22e-98 | FFCP PHASE1:Hg19::chr3:172166557..172166598,+#_172d5d52d3c336c8079c7e446836e880 | p@chr3:172166557..172166598, + |
4.22e-98 | FFCP PHASE2:Hg19::chr3:172166557..172166598,+#_172d5d52d3c336c8079c7e446836e880 | p@chr3:172166557..172166598, + |
4.22e-98 | FFCP PHASE1:Hg19::chr3:71777824..71777833,-#_172d5d52d3c336c8079c7e446836e880 | p28@EIF4E3 |
4.22e-98 | FFCP PHASE1:Hg19::chr11:79784329..79784335,-#_172d5d52d3c336c8079c7e446836e880 | p@chr11:79784329..79784335, - |
4.22e-98 | FFCP PHASE2:Hg19::chr3:71777824..71777833,-#_172d5d52d3c336c8079c7e446836e880 | p28@EIF4E3 |
4.22e-98 | FFCP PHASE2:Hg19::chr11:79784329..79784335,-#_172d5d52d3c336c8079c7e446836e880 | p@chr11:79784329..79784335, - |
4.22e-98 | FFCP PHASE1:Hg19::chr5:119669127..119669137,-#_172d5d52d3c336c8079c7e446836e880 | p4@ENST00000514240 |
7.79e-79 | FFCP PHASE2:Hg19::chr18:24435190..24435201,-#_88a1eaa31d628d6280ba56b0acd9e4eb | p@chr18:24435190..24435201, - |
7.79e-79 | FFCP PHASE1:Hg19::chr18:24435190..24435201,-#_88a1eaa31d628d6280ba56b0acd9e4eb | p@chr18:24435190..24435201, - |
7.41e-67 | FFCP PHASE2:Hg19::chr10:125454018..125454027,+#_0ac29e009f0705bba7501e8d106f933e | p@chr10:125454018..125454027, + |
7.41e-67 | FFCP PHASE1:Hg19::chr10:125454018..125454027,+#_0ac29e009f0705bba7501e8d106f933e | p@chr10:125454018..125454027, + |
1.04e-66 | FFCP PHASE2:Hg19::chr3:12225071..12225084,+#_38b025aebb4a1a1057fd175d91996f62 | p15@SYN2 |
1.04e-66 | FFCP PHASE1:Hg19::chr3:12225071..12225084,+#_38b025aebb4a1a1057fd175d91996f62 | p15@SYN2 |
7.73e-66 | FFCP PHASE2:Hg19::chrX:72432586..72432597,-#_334c30cea869a37ae6edcc771df29a53 | p@chrX:72432586..72432597, - |
7.73e-66 | FFCP PHASE1:Hg19::chrX:72432586..72432597,-#_334c30cea869a37ae6edcc771df29a53 | p@chrX:72432586..72432597, - |
2.02e-57 | FFCP PHASE1:Hg19::chr7:130745294..130745303,-#_8e30073fb8252c3c4ee8b260ab1d53ac | p@chr7:130745294..130745303, - |
2.02e-57 | FFCP PHASE2:Hg19::chr7:130745294..130745303,-#_8e30073fb8252c3c4ee8b260ab1d53ac | p@chr7:130745294..130745303, - |
2.02e-57 | FFCP PHASE2:Hg19::chrX:13789306..13789315,-#_8e30073fb8252c3c4ee8b260ab1d53ac | p@chrX:13789306..13789315, - |
2.02e-57 | FFCP PHASE1:Hg19::chrX:13789306..13789315,-#_8e30073fb8252c3c4ee8b260ab1d53ac | p@chrX:13789306..13789315, - |
2.69e-57 | FFCP PHASE2:Hg19::chr19:49932793..49932820,-#_daf1770a156fae7f3d1572d6c1f3dd91 | p@chr19:49932793..49932820, - |
2.69e-57 | FFCP PHASE1:Hg19::chr19:49932793..49932820,-#_daf1770a156fae7f3d1572d6c1f3dd91 | p@chr19:49932793..49932820, - |
3.58e-57 | FFCP PHASE2:Hg19::chr5:111964224..111964247,+#_ef0685727cd6a9773b7c07912ab0a3a6 | p1@ENST00000507565 |
3.58e-57 | FFCP PHASE1:Hg19::chr2:79601075..79601083,+#_ef0685727cd6a9773b7c07912ab0a3a6 | p@chr2:79601075..79601083, + |
3.58e-57 | FFCP PHASE2:Hg19::chr2:79601075..79601083,+#_ef0685727cd6a9773b7c07912ab0a3a6 | p@chr2:79601075..79601083, + |
3.58e-57 | FFCP PHASE1:Hg19::chr5:111964224..111964247,+#_ef0685727cd6a9773b7c07912ab0a3a6 | p1@ENST00000507565 |
4.77e-57 | FFCP PHASE2:Hg19::chr7:22158177..22158186,-#_9d0ff3422b20a5d7f808caefe4682440 | p@chr7:22158177..22158186, - |
4.77e-57 | FFCP PHASE1:Hg19::chr7:22158177..22158186,-#_9d0ff3422b20a5d7f808caefe4682440 | p@chr7:22158177..22158186, - |
6.36e-57 | FFCP PHASE2:Hg19::chr8:42981738..42981749,+#_45c88362cf1fcf3a5ed13a011c7e1855 | p4@AK056481 |
6.36e-57 | FFCP PHASE1:Hg19::chr8:42981738..42981749,+#_45c88362cf1fcf3a5ed13a011c7e1855 | p4@AK056481 |
8.82e-51 | FFCP PHASE2:Hg19::chr5:82155710..82155724,-#_3d8aeaab617bd303db0fdc4ddbae3d38 | p@chr5:82155710..82155724, - |
8.82e-51 | FFCP PHASE1:Hg19::chr5:82155710..82155724,-#_3d8aeaab617bd303db0fdc4ddbae3d38 | p@chr5:82155710..82155724, - |
1.14e-50 | FFCP PHASE1:Hg19::chr17:27901500..27901511,-#_40d7dded7139b37ed2340e60959033f0 | p25@GIT1 |
1.14e-50 | FFCP PHASE2:Hg19::chr17:27901500..27901511,-#_40d7dded7139b37ed2340e60959033f0 | p25@GIT1 |
1.14e-50 | FFCP PHASE1:Hg19::chr15:43814895..43814906,+#_40d7dded7139b37ed2340e60959033f0 | p35@MAP1A |
1.14e-50 | FFCP PHASE2:Hg19::chr15:43814895..43814906,+#_40d7dded7139b37ed2340e60959033f0 | p35@MAP1A |
2.42e-50 | FFCP PHASE1:Hg19::chr13:101712292..101712306,-#_bb8a6cd7bc8b157e38955982265f6991 | p@chr13:101712292..101712306, - |
2.42e-50 | FFCP PHASE2:Hg19::chr13:101712292..101712306,-#_bb8a6cd7bc8b157e38955982265f6991 | p@chr13:101712292..101712306, - |
2.74e-50 | FFCP PHASE1:Hg19::chr3:131756644..131756651,-#_8598e8f6ab16fb5667f409c765e44167 | p13@CPNE4 |
2.74e-50 | FFCP PHASE2:Hg19::chr3:131756644..131756651,-#_8598e8f6ab16fb5667f409c765e44167 | p13@CPNE4 |
2.74e-50 | FFCP PHASE1:Hg19::chr16:7240507..7240509,+#_8598e8f6ab16fb5667f409c765e44167 | p@chr16:7240507..7240509, + |
2.74e-50 | FFCP PHASE2:Hg19::chr19:49932741..49932746,-#_8598e8f6ab16fb5667f409c765e44167 | p@chr19:49932741..49932746, - |
2.74e-50 | FFCP PHASE2:Hg19::chr16:7240507..7240509,+#_8598e8f6ab16fb5667f409c765e44167 | p@chr16:7240507..7240509, + |
2.74e-50 | FFCP PHASE1:Hg19::chr19:49932741..49932746,-#_8598e8f6ab16fb5667f409c765e44167 | p@chr19:49932741..49932746, - |
2.74e-50 | FFCP PHASE1:Hg19::chr3:131756632..131756637,-#_8598e8f6ab16fb5667f409c765e44167 | p11@CPNE4 |
2.74e-50 | FFCP PHASE2:Hg19::chr3:131756632..131756637,-#_8598e8f6ab16fb5667f409c765e44167 | p11@CPNE4 |
3.11e-50 | FFCP PHASE2:Hg19::chr11:123502588..123502633,-#_bbc09736f53d6d9abbabb75d18714a19 | p16@SCN3B |
3.11e-50 | FFCP PHASE1:Hg19::chr11:123502588..123502633,-#_bbc09736f53d6d9abbabb75d18714a19 | p16@SCN3B |
4.0e-50 | FFCP PHASE1:Hg19::chr3:58552313..58552322,-#_72e5bd4a90771a3e0432aaa25fd931cc | p@chr3:58552313..58552322, - |
4.0e-50 | FFCP PHASE2:Hg19::chr3:58552313..58552322,-#_72e5bd4a90771a3e0432aaa25fd931cc | p@chr3:58552313..58552322, - |
4.52e-50 | FFCP PHASE1:Hg19::chr21:27651095..27651104,+#_7aada647b9334679f28350fbdbba2aea | p@chr21:27651095..27651104, + |
4.52e-50 | FFCP PHASE2:Hg19::chr20:44330800..44330802,-#_7aada647b9334679f28350fbdbba2aea | p@chr20:44330800..44330802, - |
4.52e-50 | FFCP PHASE2:Hg19::chr21:27650939..27650945,-#_7aada647b9334679f28350fbdbba2aea | p@chr21:27650939..27650945, - |
4.52e-50 | FFCP PHASE2:Hg19::chr8:26365361..26365372,-#_7aada647b9334679f28350fbdbba2aea | p5@PNMA2 |
4.52e-50 | FFCP PHASE2:Hg19::chr19:4772190..4772197,+#_7aada647b9334679f28350fbdbba2aea | p@chr19:4772190..4772197, + |
4.52e-50 | FFCP PHASE2:Hg19::chr1:99772065..99772074,+#_7aada647b9334679f28350fbdbba2aea | p13@LPPR4 |
4.52e-50 | FFCP PHASE1:Hg19::chr8:26365361..26365372,-#_7aada647b9334679f28350fbdbba2aea | p5@PNMA2 |
4.52e-50 | FFCP PHASE2:Hg19::chr18:24433388..24433397,-#_7aada647b9334679f28350fbdbba2aea | p20@AQP4 |
4.52e-50 | FFCP PHASE1:Hg19::chr20:44330800..44330802,-#_7aada647b9334679f28350fbdbba2aea | p@chr20:44330800..44330802, - |
4.52e-50 | FFCP PHASE1:Hg19::chr19:4772190..4772197,+#_7aada647b9334679f28350fbdbba2aea | p@chr19:4772190..4772197, + |
4.52e-50 | FFCP PHASE2:Hg19::chr21:27651095..27651104,+#_7aada647b9334679f28350fbdbba2aea | p@chr21:27651095..27651104, + |
4.52e-50 | FFCP PHASE1:Hg19::chr21:27650939..27650945,-#_7aada647b9334679f28350fbdbba2aea | p@chr21:27650939..27650945, - |
4.52e-50 | FFCP PHASE1:Hg19::chr18:24433388..24433397,-#_7aada647b9334679f28350fbdbba2aea | p20@AQP4 |
4.52e-50 | FFCP PHASE2:Hg19::chr8:81570615..81570619,-#_7aada647b9334679f28350fbdbba2aea | p@chr8:81570615..81570619, - |
4.52e-50 | FFCP PHASE1:Hg19::chr1:99772065..99772074,+#_7aada647b9334679f28350fbdbba2aea | p13@LPPR4 |
4.52e-50 | FFCP PHASE2:Hg19::chrX:152095682..152095708,-#_7aada647b9334679f28350fbdbba2aea | p@chrX:152095682..152095708, - |
4.52e-50 | FFCP PHASE1:Hg19::chr7:98460933..98460941,-#_7aada647b9334679f28350fbdbba2aea | p19@TMEM130 |
4.52e-50 | FFCP PHASE1:Hg19::chrX:152095682..152095708,-#_7aada647b9334679f28350fbdbba2aea | p@chrX:152095682..152095708, - |
4.52e-50 | FFCP PHASE2:Hg19::chr7:98460933..98460941,-#_7aada647b9334679f28350fbdbba2aea | p19@TMEM130 |
4.52e-50 | FFCP PHASE1:Hg19::chr8:81570615..81570619,-#_7aada647b9334679f28350fbdbba2aea | p@chr8:81570615..81570619, - |
5.15e-50 | FFCP PHASE1:Hg19::chr14:24037817..24037858,-#_6530bc1c3689a5c5d0957f2c8d83f508 | p@chr14:24037817..24037858, - |
5.15e-50 | FFCP PHASE2:Hg19::chr14:24037817..24037858,-#_6530bc1c3689a5c5d0957f2c8d83f508 | p@chr14:24037817..24037858, - |
6.61e-50 | FFCP PHASE2:Hg19::chr12:41234328..41234338,+#_6fe6e7359d84040ca54fbd91cd14c969 | p@chr12:41234328..41234338, + |
6.61e-50 | FFCP PHASE1:Hg19::chr12:41234328..41234338,+#_6fe6e7359d84040ca54fbd91cd14c969 | p@chr12:41234328..41234338, + |
3.19e-45 | FFCP PHASE1:Hg19::chr12:79843202..79843213,+#_39285d59ed12f226f8bb81a0f5d08a74 | p@chr12:79843202..79843213, + |
3.19e-45 | FFCP PHASE2:Hg19::chr12:79843202..79843213,+#_39285d59ed12f226f8bb81a0f5d08a74 | p@chr12:79843202..79843213, + |
3.19e-45 | FFCP PHASE2:Hg19::chr19:3294647..3294651,+#_39285d59ed12f226f8bb81a0f5d08a74 | p@chr19:3294647..3294651, + |
3.19e-45 | FFCP PHASE1:Hg19::chr19:3294647..3294651,+#_39285d59ed12f226f8bb81a0f5d08a74 | p@chr19:3294647..3294651, + |
6.26e-45 | FFCP PHASE1:Hg19::chr8:27316567..27316576,+#_840de89963c3a9877dd754108495f9f8 | p@chr8:27316567..27316576, + |
6.26e-45 | FFCP PHASE2:Hg19::chr9:87426979..87426990,+#_840de89963c3a9877dd754108495f9f8 | p54@NTRK2 |
6.26e-45 | FFCP PHASE1:Hg19::chr9:87426979..87426990,+#_840de89963c3a9877dd754108495f9f8 | p54@NTRK2 |
6.26e-45 | FFCP PHASE1:Hg19::chr5:63258078..63258088,-#_840de89963c3a9877dd754108495f9f8 | p6@HTR1A |
6.26e-45 | FFCP PHASE2:Hg19::chr5:63258078..63258088,-#_840de89963c3a9877dd754108495f9f8 | p6@HTR1A |
6.26e-45 | FFCP PHASE2:Hg19::chr8:27316567..27316576,+#_840de89963c3a9877dd754108495f9f8 | p@chr8:27316567..27316576, + |
7.83e-45 | FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_dd0ba646118c816d9e26eb7531e47d11 | p12@ATP1A2 |
7.83e-45 | FFCP PHASE2:Hg19::chr5:63258105..63258124,-#_dd0ba646118c816d9e26eb7531e47d11 | p2@HTR1A |
7.83e-45 | FFCP PHASE1:Hg19::chr2:101965038..101965076,-#_dd0ba646118c816d9e26eb7531e47d11 | p@chr2:101965038..101965076, - |
7.83e-45 | FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_dd0ba646118c816d9e26eb7531e47d11 | p12@ATP1A2 |
7.83e-45 | FFCP PHASE2:Hg19::chr2:101965038..101965076,-#_dd0ba646118c816d9e26eb7531e47d11 | p@chr2:101965038..101965076, - |
7.83e-45 | FFCP PHASE1:Hg19::chr5:63258105..63258124,-#_dd0ba646118c816d9e26eb7531e47d11 | p2@HTR1A |