UBERON:0003069
From FANTOM5_SSTAR
| Name: | otic placode | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175] | ||
| Xrefs: |
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| Synonyms: |
"auditory placode" RELATED [] "ear placode" RELATED [] "ear/otic placode" RELATED [] | ||
| Comments: | With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175] | ||
| Alt_id: | UBERON:XAO_0000223-ZFA_0000138 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003067(dorsolateral placode) |
|---|---|
| part_of: | UBERON:0001690(ear) |
Children
| develops from: | UBERON:0009123 (otic cup) |
|---|---|
| part of: | UBERON:0003249 (epithelium of otic placode) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003069 (otic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_79a6708211b885bd34d9bea04e5ffea8 | p9@Ankrd24 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_79a6708211b885bd34d9bea04e5ffea8 | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_79a6708211b885bd34d9bea04e5ffea8 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_79a6708211b885bd34d9bea04e5ffea8 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_79a6708211b885bd34d9bea04e5ffea8 | p5@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_79a6708211b885bd34d9bea04e5ffea8 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_79a6708211b885bd34d9bea04e5ffea8 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_79a6708211b885bd34d9bea04e5ffea8 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_79a6708211b885bd34d9bea04e5ffea8 | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_79a6708211b885bd34d9bea04e5ffea8 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_79a6708211b885bd34d9bea04e5ffea8 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_79a6708211b885bd34d9bea04e5ffea8 | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_79a6708211b885bd34d9bea04e5ffea8 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_79a6708211b885bd34d9bea04e5ffea8 | p5@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_79a6708211b885bd34d9bea04e5ffea8 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_79a6708211b885bd34d9bea04e5ffea8 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_79a6708211b885bd34d9bea04e5ffea8 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_79a6708211b885bd34d9bea04e5ffea8 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_79a6708211b885bd34d9bea04e5ffea8 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_79a6708211b885bd34d9bea04e5ffea8 | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_79a6708211b885bd34d9bea04e5ffea8 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_79a6708211b885bd34d9bea04e5ffea8 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_79a6708211b885bd34d9bea04e5ffea8 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_79a6708211b885bd34d9bea04e5ffea8 | p1@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_79a6708211b885bd34d9bea04e5ffea8 | p1@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_79a6708211b885bd34d9bea04e5ffea8 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_79a6708211b885bd34d9bea04e5ffea8 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_79a6708211b885bd34d9bea04e5ffea8 | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_79a6708211b885bd34d9bea04e5ffea8 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_79a6708211b885bd34d9bea04e5ffea8 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_79a6708211b885bd34d9bea04e5ffea8 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_79a6708211b885bd34d9bea04e5ffea8 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_79a6708211b885bd34d9bea04e5ffea8 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_79a6708211b885bd34d9bea04e5ffea8 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_79a6708211b885bd34d9bea04e5ffea8 | p5@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_79a6708211b885bd34d9bea04e5ffea8 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_79a6708211b885bd34d9bea04e5ffea8 | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_79a6708211b885bd34d9bea04e5ffea8 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_79a6708211b885bd34d9bea04e5ffea8 | p@chr2:73232344..73232356, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
