UBERON:0003902
From FANTOM5_SSTAR
Name: | retinal neural layer | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216] | ||
Xrefs: |
| ||
Synonyms: |
"neural layer of retina" EXACT [FMA:58628] "neural retina" EXACT [XAO:0003216, ZFA:0000046] "neural retinal epithelium" RELATED [MA:000027] "neuroretina" EXACT [ZFA:0000046] "stratum nervosum (retina)" EXACT [FMA:58628] | ||
Comments: | editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node. | ||
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0001781(layer of retina) |
---|---|
develops_from: | UBERON:0005425(presumptive neural retina) |
Children
develops from: | UBERON:0000941 (cranial nerve II) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003902 (retinal neural layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fb | p@chr12:57628762..57628773, - |
5.42e-195 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fb | p@chr12:57628762..57628773, - |
9.37e-99 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr7:15056365..15056368, - |
2.55e-98 | FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr21:22483836..22483880, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:240176859..240176904, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:163246025..163246029, + |
2.55e-98 | FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr11:30166055..30166059, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:97626726..97626741, + |
2.55e-98 | FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr21:45724075..45724081, + |
2.55e-98 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p3@ENST00000558781 |
2.55e-98 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:37227792..37227796, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:296753..296755,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:296753..296755, - |
2.55e-98 | FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:154942133..154942148, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:27750995..27750997, - |
2.55e-98 | FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr16:66170755..66170759, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p41@NAV3 |
2.55e-98 | FFCP PHASE1:Hg19::chr12:296753..296755,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:296753..296755, - |
2.55e-98 | FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr7:73444812..73444816, + |
2.55e-98 | FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr7:73444812..73444816, + |
2.55e-98 | FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:27750995..27750997, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:29645795..29645797,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:29645795..29645797, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:85119696..85119699, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:21277180..21277193, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr16:51174920..51174928, - |
2.55e-98 | FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:72875355..72875358, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:192696669..192696673, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:203036812..203036840, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:37679189..37679193, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p10@ALK |
2.55e-98 | FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:171939999..171940009, - |
2.55e-98 | FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chrX:131884370..131884375, - |
2.55e-98 | FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chrX:25873187..25873209, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p2@ATAD3B |
2.55e-98 | FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:134472430..134472432, + |
2.55e-98 | FFCP PHASE2:Hg19::chr10:37679189..37679193,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:37679189..37679193, + |
2.55e-98 | FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr8:130597061..130597068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:68589926..68589929, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:169073323..169073334,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p4@ENST00000415637 |
2.55e-98 | FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:126962527..126962529, - |
2.55e-98 | FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr13:64423563..64423566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:218214846..218214850, - |
2.55e-98 | FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr6:16317123..16317126, + |
2.55e-98 | FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr17:47107522..47107524, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:133035182..133035195, - |
2.55e-98 | FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr22:30951607..30951613, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:126962527..126962529, - |
2.55e-98 | FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr6:16317123..16317126, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:58471631..58471634, + |
2.55e-98 | FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr15:36402459..36402465, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:13992334..13992338, - |
2.55e-98 | FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p4@SNORD111B |
2.55e-98 | FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:58471631..58471634, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:68527802..68527806, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:139501766..139501798, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p7@TMEM88B |
2.55e-98 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr18:39859562..39859566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr16:66170755..66170759, - |
2.55e-98 | FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr9:79519652..79519664, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p1@ENST00000510391 |
2.55e-98 | FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:29484252..29484254, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:66713214..66713221, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p18@TGFB3 |
2.55e-98 | FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:127992016..127992052, + |
2.55e-98 | FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:139501766..139501798, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr9:79519652..79519664, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p1@ENST00000510391 |
2.55e-98 | FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:59444098..59444102, + |
2.55e-98 | FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr18:45498690..45498695, - |
2.55e-98 | FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:127992016..127992052, + |
2.55e-98 | FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:118927879..118927891, + |
2.55e-98 | FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr19:20382476..20382481, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr19:48479835..48479841, - |
2.55e-98 | FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr19:35978717..35978722, - |
2.55e-98 | FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:68567714..68567717, + |
2.55e-98 | FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr17:12935401..12935405, - |