Personal tools

UBERON:0004288

From FANTOM5_SSTAR

Jump to: navigation, search

Name:skeleton
Namespace:FANTOM
Definition:"all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton]
Xrefs:
links:

AEO:0000168
EFO:0000806
EHDAA2:0001843
EHDAA:5047
EHDAA:8005
EHDAA:8041
FMA:23875
GAID:177
galen:Skeleton
MA:0003006
MAT:0000032
MESH:A.02.835
MIAA:0000032
OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
SCTID:361378004
VSAO:0000026

XAO:0004053
Synonyms: "set of all bones" EXACT []
"set of bones of body" EXACT []
Comments:Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons.
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster)
disjoint_from:UBERON:0004770(articular system)
part_of:UBERON:0001434(skeletal system)



Children

part of:UBERON:0005863 (cartilaginous condensation),UBERON:0005866 (pre-cartilage condensation),UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004288 (skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_1e5a46a00cb84e51a124c87c983d473dp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_1e5a46a00cb84e51a124c87c983d473dp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_8d34c09ac6557e076ffbce01439f2faap13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_8d34c09ac6557e076ffbce01439f2faap12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_8d34c09ac6557e076ffbce01439f2faap@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_8d34c09ac6557e076ffbce01439f2faap@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_8d34c09ac6557e076ffbce01439f2faap11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_8d34c09ac6557e076ffbce01439f2faap12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_8d34c09ac6557e076ffbce01439f2faap13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_8d34c09ac6557e076ffbce01439f2faap11@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_a907e9f8eccb7fb0a9258453db3d31c6p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_a907e9f8eccb7fb0a9258453db3d31c6p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_a907e9f8eccb7fb0a9258453db3d31c6p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_a907e9f8eccb7fb0a9258453db3d31c6p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_a0faf0c47a29ec50cafabea24047290dp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_a0faf0c47a29ec50cafabea24047290dp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_1ebe0985513b9a63d6bcd9ce00b6e44dp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_1ebe0985513b9a63d6bcd9ce00b6e44dp9@C17orf67
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_fb260202668d1b0393ce9d5eefa1aac0p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_fb260202668d1b0393ce9d5eefa1aac0p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_3bf64b8262b0682ded6fa600e3e645b6p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_3bf64b8262b0682ded6fa600e3e645b6p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_3bf64b8262b0682ded6fa600e3e645b6p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_3bf64b8262b0682ded6fa600e3e645b6p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_3bf64b8262b0682ded6fa600e3e645b6p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_3bf64b8262b0682ded6fa600e3e645b6p7@ALX1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_2bbe79cab8e8dd02b65794dc27bcc3d9p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_2bbe79cab8e8dd02b65794dc27bcc3d9p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_2bbe79cab8e8dd02b65794dc27bcc3d9p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_2bbe79cab8e8dd02b65794dc27bcc3d9p@chr2:33519090..33519092, +
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b5ffd70e9a29cdf04b6063dea703a81ap26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b5ffd70e9a29cdf04b6063dea703a81ap26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_dadf23c44c832b6001afc5ada4bc8cefp@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_dadf23c44c832b6001afc5ada4bc8cefp@chr9:21934585..21934591, -
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_5ab5abd6003e17f9aab93088091871d8p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_5ab5abd6003e17f9aab93088091871d8p@chr6:51525810..51525817, +
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_c6f8125c89ebb5fa561d5e8d1d458a16p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_c6f8125c89ebb5fa561d5e8d1d458a16p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_c6f8125c89ebb5fa561d5e8d1d458a16p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_c6f8125c89ebb5fa561d5e8d1d458a16p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_c6f8125c89ebb5fa561d5e8d1d458a16p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_c6f8125c89ebb5fa561d5e8d1d458a16p8@LHX8
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_43c44c17f3de3e86085da7e1fc389849p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_43c44c17f3de3e86085da7e1fc389849p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_43c44c17f3de3e86085da7e1fc389849p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_43c44c17f3de3e86085da7e1fc389849p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr9:125165007..125165016, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_51fe20f8d6ab0ea0ffcdbfa5138043fcp@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_51fe20f8d6ab0ea0ffcdbfa5138043fcp@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_5c7ba523c2951387afea4be5dd8312fcp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_5c7ba523c2951387afea4be5dd8312fcp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_5c7ba523c2951387afea4be5dd8312fcp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_5c7ba523c2951387afea4be5dd8312fcp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_5c7ba523c2951387afea4be5dd8312fcp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_5c7ba523c2951387afea4be5dd8312fcp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_5c7ba523c2951387afea4be5dd8312fcp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_5c7ba523c2951387afea4be5dd8312fcp@chr16:24096441..24096449, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_924e38b664f8472087fdcf6e56c15a48p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_924e38b664f8472087fdcf6e56c15a48p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_04ae1fbf69dbb55b5aec06691ded793bp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_04ae1fbf69dbb55b5aec06691ded793bp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_9fa431d9437ad7c68a2f4791cd597db9p3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_9fa431d9437ad7c68a2f4791cd597db9p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_eebd0d4cc04b1b44272bbec8e7002fdbp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_eebd0d4cc04b1b44272bbec8e7002fdbp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_e52e1afc12ffb4a1a30c4ac29a2ad361p5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_e52e1afc12ffb4a1a30c4ac29a2ad361p5@Pla2g5
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_bc7e20a76449c0c5afa8db55265c7c9dp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_bc7e20a76449c0c5afa8db55265c7c9dp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_bc7e20a76449c0c5afa8db55265c7c9dp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_bc7e20a76449c0c5afa8db55265c7c9dp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_bc7e20a76449c0c5afa8db55265c7c9dp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_bc7e20a76449c0c5afa8db55265c7c9dp@chr10:15760985..15760992, -
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_557aaa734b94a751f979745b4373a5ddp9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_557aaa734b94a751f979745b4373a5ddp9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_5adfade046b01a2c4f265ab286ca901cp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_5adfade046b01a2c4f265ab286ca901cp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr13:58291223..58291226, +
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_444345b06b86a21d8a502cc0cd27e3e7p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_444345b06b86a21d8a502cc0cd27e3e7p2@uc009mdq.1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004288&oldid=3277648"