UBERON:0005290
From FANTOM5_SSTAR
Name: | myelencephalon | |
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Namespace: | FANTOM | |
Definition: | "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon] | |
Xrefs: |
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Comments: | the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004733(segmental subdivision of hindbrain) |
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develops_from: | UBERON:0010096(future myelencephalon) |
part_of: | UBERON:0002028(hindbrain) |
Children
part of: | UBERON:0001896 (medulla oblongata) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Mouse (Mus musculus)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005290 (myelencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data