Personal tools

UBERON:0010230

From FANTOM5_SSTAR

Jump to: navigation, search

Name:eyeball of camera-type eye
Namespace:FANTOM
Definition:"The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)]
Xrefs:
links:

FMA:12513
MIAA:0000283

SCTID:244486005
Synonyms: "bulbus oculi" EXACT []
"eye" RELATED INCONSISTENT []
"eyeball" EXACT [FMA:12513]
"globe" RELATED [HP:0100886, MIAA:0000283]
Comments:See notes for camera-type eye

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0000019(camera-type eye)



Children

derives from:FF:0011252 (mouse eyeball- neonate N01 sample),FF:0011264 (mouse eyeball- neonate N00 sample),FF:0011281 (mouse eyeball- neonate N02 sample),FF:0011309 (mouse eyeball- adult sample),FF:0011316 (mouse eyeball- embryo E12 sample),FF:0011335 (mouse eyeball- embryo E14 sample),FF:0011344 (mouse eyeball- embryo E15 sample),FF:0011423 (mouse eyeball- neonate N16 sample),FF:0011521 (mouse eyeball- embryo E17 sample)
part of:UBERON:0001801 (anterior segment of eyeball),UBERON:0001802 (posterior segment of eyeball),UBERON:0012430 (tunica fibrosa of eyeball)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010230 (eyeball of camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data