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Revision as of 17:13, 15 June 2012

Name:internal ear
Definition:"Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
Xrefs:
links:

AAO:0000238
BTO:0000630
EFO:0001363
EHDAA:504
EHDAA2:0000831
EMAPA:16194
EV:0100361
FMA:60909
GAID:871
galen:InnerEar
[ 200px-Gray923.png 200px-Gray923.png]
MA:0000237
MAT:0000145
MESH:A.09.246.631
MIAA:0000145
ncithesaurus:Internal_Ear
NIF_GrossAnatomy:birnlex_1196
OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
SCTID:181189006
TAO:0000217
VHOG:0000284
XAO:0000192

ZFA:0000217
Synonyms: "auris interna" RELATED [BTO:0000630]
"inner ear" EXACT []
"labyrinth" RELATED []
"otocyst" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0003051(ear vesicle)
part_of:UBERON:0001690(ear)



Children

derives from:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample)
part of:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_290235bc8c76f63330a2b730572b2dadp4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_290235bc8c76f63330a2b730572b2dadp10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_290235bc8c76f63330a2b730572b2dadp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_290235bc8c76f63330a2b730572b2dadp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_290235bc8c76f63330a2b730572b2dadp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_290235bc8c76f63330a2b730572b2dadp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_290235bc8c76f63330a2b730572b2dadp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_290235bc8c76f63330a2b730572b2dadp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_290235bc8c76f63330a2b730572b2dadp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_290235bc8c76f63330a2b730572b2dadp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_290235bc8c76f63330a2b730572b2dadp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_290235bc8c76f63330a2b730572b2dadp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_290235bc8c76f63330a2b730572b2dadp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_290235bc8c76f63330a2b730572b2dadp4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_290235bc8c76f63330a2b730572b2dadp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_290235bc8c76f63330a2b730572b2dadp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_290235bc8c76f63330a2b730572b2dadp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_290235bc8c76f63330a2b730572b2dadp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_290235bc8c76f63330a2b730572b2dadp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_290235bc8c76f63330a2b730572b2dadp5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_290235bc8c76f63330a2b730572b2dadp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_290235bc8c76f63330a2b730572b2dadp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_290235bc8c76f63330a2b730572b2dadp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_290235bc8c76f63330a2b730572b2dadp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_290235bc8c76f63330a2b730572b2dadp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_290235bc8c76f63330a2b730572b2dadp11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_290235bc8c76f63330a2b730572b2dadp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_290235bc8c76f63330a2b730572b2dadp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_290235bc8c76f63330a2b730572b2dadp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_290235bc8c76f63330a2b730572b2dadp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_290235bc8c76f63330a2b730572b2dadp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_290235bc8c76f63330a2b730572b2dadp4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_290235bc8c76f63330a2b730572b2dadp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_290235bc8c76f63330a2b730572b2dadp5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_290235bc8c76f63330a2b730572b2dadp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_290235bc8c76f63330a2b730572b2dadp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_290235bc8c76f63330a2b730572b2dadp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_290235bc8c76f63330a2b730572b2dadp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_290235bc8c76f63330a2b730572b2dadp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_290235bc8c76f63330a2b730572b2dadp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_290235bc8c76f63330a2b730572b2dadp1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_290235bc8c76f63330a2b730572b2dadp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_290235bc8c76f63330a2b730572b2dadp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_290235bc8c76f63330a2b730572b2dadp10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_290235bc8c76f63330a2b730572b2dadp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_290235bc8c76f63330a2b730572b2dadp2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_290235bc8c76f63330a2b730572b2dadp5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_290235bc8c76f63330a2b730572b2dadp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_290235bc8c76f63330a2b730572b2dadp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_290235bc8c76f63330a2b730572b2dadp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_290235bc8c76f63330a2b730572b2dadp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_290235bc8c76f63330a2b730572b2dadp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_290235bc8c76f63330a2b730572b2dadp4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_290235bc8c76f63330a2b730572b2dadp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_290235bc8c76f63330a2b730572b2dadp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_290235bc8c76f63330a2b730572b2dadp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_290235bc8c76f63330a2b730572b2dadp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_290235bc8c76f63330a2b730572b2dadp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_290235bc8c76f63330a2b730572b2dadp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_290235bc8c76f63330a2b730572b2dadp10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_290235bc8c76f63330a2b730572b2dadp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_290235bc8c76f63330a2b730572b2dadp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_290235bc8c76f63330a2b730572b2dadp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_290235bc8c76f63330a2b730572b2dadp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_290235bc8c76f63330a2b730572b2dadp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_290235bc8c76f63330a2b730572b2dadp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_290235bc8c76f63330a2b730572b2dadp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_290235bc8c76f63330a2b730572b2dadp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_290235bc8c76f63330a2b730572b2dadp10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_290235bc8c76f63330a2b730572b2dadp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_290235bc8c76f63330a2b730572b2dadp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_290235bc8c76f63330a2b730572b2dadp7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_290235bc8c76f63330a2b730572b2dadp15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_290235bc8c76f63330a2b730572b2dadp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_290235bc8c76f63330a2b730572b2dadp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_290235bc8c76f63330a2b730572b2dadp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_290235bc8c76f63330a2b730572b2dadp3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_290235bc8c76f63330a2b730572b2dadp2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_290235bc8c76f63330a2b730572b2dadp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_290235bc8c76f63330a2b730572b2dadp@chr11:89702580..89702593, -

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