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UBERON:0001849

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Name:membranous labyrinth
Namespace:FANTOM
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0005641(otocyst epithelium)
part_of:UBERON:0001846(internal ear)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ff6b9d38f6a159b0c39897a75ae91190p7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_ff6b9d38f6a159b0c39897a75ae91190p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ff6b9d38f6a159b0c39897a75ae91190p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_ff6b9d38f6a159b0c39897a75ae91190p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_ff6b9d38f6a159b0c39897a75ae91190p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_ff6b9d38f6a159b0c39897a75ae91190p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Espnl

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