UBERON:0003929: Difference between revisions
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|id=UBERON:0003929
|name=gut epithelium
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|def="An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic]
|xref=BTO:0000956;;EHDAA2:000...") |
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Revision as of 17:19, 15 June 2012
| Name: | gut epithelium | |
|---|---|---|
| Definition: | "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic] | |
| Xrefs: |
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| Synonyms: |
"digestive tract epithelial tissue" EXACT [OBOL:automatic] "digestive tract epithelium" EXACT [OBOL:automatic] "epithelial tissue of digestive tract" EXACT [OBOL:automatic] "epithelial tissue of gut" EXACT [OBOL:automatic] "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic] "epithelium of digestive tract" EXACT [OBOL:automatic] "epithelium of gut" EXACT [OBOL:automatic] "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic] "gut epithelial tissue" EXACT [OBOL:automatic] "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic] "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005911(endo-epithelium) |
|---|---|
| part_of: | UBERON:0001555(digestive tract) |
Children
| is a: | UBERON:0001277 (intestinal epithelium),UBERON:0002424 (oral epithelium),UBERON:0003351 (pharyngeal epithelium),UBERON:0003353 (epithelium of hindgut),UBERON:0004809 (salivary gland epithelium),UBERON:0009497 (epithelium of foregut-midgut junction),UBERON:0012481 (cloacal epithelium),UBERON:0015833 (foregut epithelium) |
|---|---|
| part of: | CL:0000682 (M cell of gut),UBERON:0009497 (epithelium of foregut-midgut junction),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0009846 (embryonic cloacal epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
... further results Mouse (Mus musculus)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003929 (gut epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
