CL:0000077: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000077
|name=mesothelial cell
|namespace=cell
|def="A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544...") |
No edit summary |
||
Line 2: | Line 2: | ||
|id=CL:0000077 | |id=CL:0000077 | ||
|name=mesothelial cell | |name=mesothelial cell | ||
|namespace= | |namespace=efo | ||
|def="A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] | |def="A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] | ||
|xref=FMA:66773 | |xref=FMA:66773 | ||
|is_a=CL:0000076;;CL:0000213 | |is_a=CL:0000076;;CL:0000213;;EFO:0000324 | ||
|synonym=" | |synonym="mesotheliocyte" EXACT [] | ||
|comment= | |comment= | ||
|alt_id= | |alt_id= | ||
Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} |
Revision as of 17:36, 15 June 2012
Name: | mesothelial cell | |
---|---|---|
Namespace: | efo | |
Definition: | "A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] | |
Xrefs: |
| |
Synonyms: | "mesotheliocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000076(squamous epithelial cell),CL:0000213(lining cell),EFO:0000324(cell type) |
---|---|
develops_from: | CL:0000222(mesodermal cell) |
Children
is a: | CL:0002625 (seminiferous tubule epithelial cell) |
---|---|
derives from: | FF:0000099 (human mesothelial cell sample),FF:0102424 (mesothelioma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
- 10852-111F6 (mesothelioma cell line:Mero-48a)
... further results Mouse (Mus musculus)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
- 10852-111F6 (mesothelioma cell line:Mero-48a)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000077 (mesothelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data