Personal tools

UBERON:0004209: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|name=renal vesicle
|name=renal vesicle
|namespace=
|namespace=
|def="The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells" [GO:0072077]
|def="The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. " [GO:0072077]
|xref=EMAPA:27678;;EMAPA:27829;;ZFA:0005586
|xref=
|is_a=UBERON:0000483;;UBERON:0004211
|is_a=UBERON:0004211;;UBERON:0007503
|synonym="stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html, ZFA:0005586]
|synonym="stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html, ZFA:0005586]
|comment=TODO - make a more specific develops_from relationship - see UBERON:0005107
|comment=Editor notes: note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004208
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001285
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:04, 26 June 2012

Name:renal vesicle
Definition:"The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. " [GO:0072077]
Synonyms: "stage I nephron" EXACT ZFA:0005586
Comments:Editor notes: note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004211(nephron epithelium),UBERON:0007503(epithelial vesicle)



Children

develops from:UBERON:0004198 (comma-shaped body),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004209 (renal vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_2c37c430723ed188cee7769131b6ee56p@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_2c37c430723ed188cee7769131b6ee56p@chr2:120409486..120409492, +
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_be70af6ff884ac6f15aaff1dacfe819cp1@ENST00000413103
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_be70af6ff884ac6f15aaff1dacfe819cp1@ENST00000413103
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_a6382e286dbdf1b5d2081fb4cb4af070p@chr17:79426453..79426462, +
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_a6382e286dbdf1b5d2081fb4cb4af070p@chr17:79426453..79426462, +
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_61498b375dc84a822ddbd50162324775p@chr8:77557753..77557755, -
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_61498b375dc84a822ddbd50162324775p@chr8:77557753..77557755, -
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_2392da3b90616dd328db4ebaddbc500fp6@TINAGL1
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_2392da3b90616dd328db4ebaddbc500fp6@TINAGL1
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_b9a660d495a350ee924a854156fcafdbp9@FURIN
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_b9a660d495a350ee924a854156fcafdbp9@FURIN
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_888028d57e6b6ea0cc9e5044ba6ffb8bp7@LRRN4
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_888028d57e6b6ea0cc9e5044ba6ffb8bp7@LRRN4
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_908f1ab254a86780c2bcd5b584a1faa8p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_908f1ab254a86780c2bcd5b584a1faa8p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_908f1ab254a86780c2bcd5b584a1faa8p7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_908f1ab254a86780c2bcd5b584a1faa8p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_908f1ab254a86780c2bcd5b584a1faa8p7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_908f1ab254a86780c2bcd5b584a1faa8p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr2:26700331..26700340, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_d6eed8dd14fec1a57a2250b83477a28bp@chr10:3477893..3477912, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_d6eed8dd14fec1a57a2250b83477a28bp@chr10:3477893..3477912, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_738f99ca439b716f5376a47eba1cbcd2p@chr1:172926077..172926120, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_738f99ca439b716f5376a47eba1cbcd2p@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_a41099eee94908a51cc8a52e21fb7ed7p5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_a41099eee94908a51cc8a52e21fb7ed7p5@APLN
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_62f44026e6e772a4ddba62ffef7db8d7p@chr2:693380..693398, +
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_62f44026e6e772a4ddba62ffef7db8d7p@chr2:693380..693398, +
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_5c8ffea96fb24557565cceb0b47707cfp@chr6:84849252..84849259, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_5c8ffea96fb24557565cceb0b47707cfp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_5c8ffea96fb24557565cceb0b47707cfp@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_5c8ffea96fb24557565cceb0b47707cfp@chr2:133426030..133426041, -
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_e2a0a2508ab60241a1199a56699e04eep23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_e2a0a2508ab60241a1199a56699e04eep10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_e2a0a2508ab60241a1199a56699e04eep23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_e2a0a2508ab60241a1199a56699e04eep10@TRIL
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr15:85403302..85403304, +
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr15:85403302..85403304, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_e9df6dec30a6e8fa7e2cbc571e98d27bp@chr16:2141529..2141537, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_e9df6dec30a6e8fa7e2cbc571e98d27bp@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_7535efc392a784eaf5f537cadbfa46f7p@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_7535efc392a784eaf5f537cadbfa46f7p@chr5:74244100..74244117, +
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_4f3b5e662c2a76585b790444f2a0a192p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_4f3b5e662c2a76585b790444f2a0a192p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_6e23282ea5d05012d781d29e27cc2e47p@chr16:86768403..86768437, +
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_6e23282ea5d05012d781d29e27cc2e47p@chr16:86768403..86768437, +
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_4ca89d0ccd55799e5320184d0b6dc7b0p@chr17:2076002..2076026, -
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_4ca89d0ccd55799e5320184d0b6dc7b0p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_40cdc7d43231e3e268048af041dce42ep3@FAM167B
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_40cdc7d43231e3e268048af041dce42ep3@FAM167B
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_966bc2426ab5830fc1bb9e9d52161a09p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_966bc2426ab5830fc1bb9e9d52161a09p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_0567382b7c7058264906e7bcb35a5418p1@ENST00000487339
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_0567382b7c7058264906e7bcb35a5418p1@ENST00000487339
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_8b2d59947a9f822c6c79e8b359174a0ap@chr19:47231340..47231383, -
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_8b2d59947a9f822c6c79e8b359174a0ap@chr19:47231340..47231383, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_526136fcb33d10e19c62b4ed5226b243p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_526136fcb33d10e19c62b4ed5226b243p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_309ec1f01286eeb09a36f3b50be0ac32p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_309ec1f01286eeb09a36f3b50be0ac32p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_f68f7d14345215f83342f048020dd227p@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_f68f7d14345215f83342f048020dd227p@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_d26403ab91a979cb8e3320c99acd137ap@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_d26403ab91a979cb8e3320c99acd137ap@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_d26403ab91a979cb8e3320c99acd137ap@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_d26403ab91a979cb8e3320c99acd137ap@chr9:35753821..35753835, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_a85f81853b5fb9a2e647b8792afffc7cp@chr4:145568170..145568180, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_a85f81853b5fb9a2e647b8792afffc7cp@chr4:145568170..145568180, -
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_b8700712e088a4d231c578f215353fbap1@WDR87
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_b8700712e088a4d231c578f215353fbap1@WDR87
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_f8e606f9bba856b3ce2fcd8a6941b75ap@chr14:91270270..91270281, -
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_f8e606f9bba856b3ce2fcd8a6941b75ap@chr14:91270270..91270281, -
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_f07375e17eaafcdce8394d1434ce5a8dp6@ACVRL1
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_f07375e17eaafcdce8394d1434ce5a8dp6@ACVRL1
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_666b8df3b5ee86e43fd252dd91eeb28ap@chr3:43538305..43538325, -
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_666b8df3b5ee86e43fd252dd91eeb28ap@chr3:43538305..43538325, -
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_47d30c285a726633e095c245057ca97ep@chr17:171147..171161, +
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_47d30c285a726633e095c245057ca97ep@chr17:171147..171161, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_7a11c370c32093a82038b23370ab028bp@chr1:22211913..22211920, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_7a11c370c32093a82038b23370ab028bp@chr1:22211913..22211920, +
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8b5c38414a97e98ddc3167e164f65ba9p7@HOXA10
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8b5c38414a97e98ddc3167e164f65ba9p7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_437f69039b68a603a7443320ba173005p3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_437f69039b68a603a7443320ba173005p3@TINAGL1
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_46bb073926f33dca0b244d507842e642p17@CTGF
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_46bb073926f33dca0b244d507842e642p17@CTGF
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_4f16e872073068a950497cd2235ec0efp5@AP2A2
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_4f16e872073068a950497cd2235ec0efp5@AP2A2
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_b66200b48c2a2eb30ddbb903b71e6353p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_b66200b48c2a2eb30ddbb903b71e6353p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_4cf2c3d56bd6ace541bafa41a145a276p@chrX:128781853..128781866, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_4cf2c3d56bd6ace541bafa41a145a276p@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_4dbe9cb22c612065409af4327614dd68p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_4dbe9cb22c612065409af4327614dd68p@chr16:86604624..86604648, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004209&oldid=1835976"