UBERON:0007213: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def= | |def= | ||
|xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16169;;ZFA:0000787 | |xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16100;;EMAPA:16169;;EMAPA:16271;;EMAPA_RETIRED:16271;;TAO:0000787;;ZFA:0000787 | ||
|is_a=UBERON: | |is_a=UBERON:0005253;;UBERON:0010313 | ||
|synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735] | |synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735] | ||
|comment= | |comment= | ||
Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= |
Revision as of 17:07, 26 June 2012
Name: | mesenchyme derived from head neural crest | |
---|---|---|
Xrefs: |
| |
Synonyms: |
"head mesenchyme from cranial neural crest" EXACT [] "head mesenchyme from neural crest" EXACT [EHDAA2:0000735] | |
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005253(head mesenchyme),UBERON:0010313(neural crest-derived structure) |
---|
Children
is a: | UBERON:0003314 (eye mesenchyme),UBERON:0005565 (facio-acoustic neural crest),UBERON:0009501 (mesenchyme of fronto-nasal process),UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest) |
---|---|
develops from: | UBERON:0001777 (substantia propria of cornea),UBERON:0009204 (medial nasal process mesenchyme),UBERON:0009501 (mesenchyme of fronto-nasal process) |
part of: | UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007213 (mesenchyme derived from head neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data