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UBERON:0007213: Difference between revisions

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|namespace=
|namespace=
|def=
|def=
|xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16169;;ZFA:0000787
|xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16100;;EMAPA:16169;;EMAPA:16271;;EMAPA_RETIRED:16271;;TAO:0000787;;ZFA:0000787
|is_a=UBERON:0004121;;UBERON:0005253
|is_a=UBERON:0005253;;UBERON:0010313
|synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
|synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
|comment=
|comment=
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|obo_creation_date=
|obo_creation_date=
|subset=vertebrate_core
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003099
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=

Revision as of 17:07, 26 June 2012

Name:mesenchyme derived from head neural crest
Xrefs:
links:

EFO:0003572
EHDAA2:0000735
EMAPA:16100
EMAPA:16169
EMAPA:16271
EMAPA_RETIRED:16271
TAO:0000787

ZFA:0000787
Synonyms: "head mesenchyme from cranial neural crest" EXACT []
"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005253(head mesenchyme),UBERON:0010313(neural crest-derived structure)



Children

is a:UBERON:0003314 (eye mesenchyme),UBERON:0005565 (facio-acoustic neural crest),UBERON:0009501 (mesenchyme of fronto-nasal process),UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest)
develops from:UBERON:0001777 (substantia propria of cornea),UBERON:0009204 (medial nasal process mesenchyme),UBERON:0009501 (mesenchyme of fronto-nasal process)
part of:UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007213 (mesenchyme derived from head neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data