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UBERON:0003082: Difference between revisions

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|subset=uberon_slim;;vertebrate_core
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004290
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0000926
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:33, 27 June 2012

Name:myotome
Definition:"A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
Xrefs:
links:

AAO:0011067
BTO:0000742
EHDAA2:0003431
EHDAA:1721
EHDAA:1727
EHDAA:1733
EHDAA:1739
[ Gray65.png Gray65.png]
[ 200px-Gray65.png 200px-Gray65.png]
ncithesaurus:Myotome_Region
SCTID:344535001
TAO:0001056
VHOG:0001244
XAO:0000315

ZFA:0001056
Synonyms: "muscle plate" RELATED []
"myomere" RELATED []
"myotome region" RELATED []
"myotomes" RELATED []
"myotomus" RELATED LATIN [Wikipedia:Myotome]
Comments:Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
Alt_id: UBERON:XAO_0000315-ZFA_0001056
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0004290(dermomyotome)
part_of:UBERON:0000926(mesoderm)



Children

develops from:UBERON:0001134 (skeletal muscle tissue),UBERON:0014892 (skeletal muscle organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003082 (myotome), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.