UBERON:0004120
From FANTOM5_SSTAR
| Name: | mesoderm-derived structure |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm] |
| Comments: | Grouping term for query purposes |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|---|
| develops_from: | UBERON:0000926(mesoderm) |
Children
| is a: | UBERON:0000042 (serous membrane),UBERON:0000056 (ureter),UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000080 (mesonephros),UBERON:0000162 (cloaca),UBERON:0000305 (amnion),UBERON:0000412 (dermal papilla),UBERON:0000415 (artery wall),UBERON:0000946 (cardial valve),UBERON:0000948 (heart),UBERON:0000990 (reproductive system),UBERON:0001103 (diaphragm),UBERON:0001130 (vertebral column),UBERON:0001178 (visceral peritoneum),UBERON:0001235 (adrenal cortex),UBERON:0001236 (adrenal medulla),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001468 (intervertebral joint),UBERON:0001601 (extra-ocular muscle),UBERON:0001694 (petrous part of temporal bone),UBERON:0001703 (neurocranium),UBERON:0001839 (bony labyrinth),UBERON:0001844 (cochlea),UBERON:0001981 (blood vessel),UBERON:0001992 (papillary layer of dermis),UBERON:0002067 (dermis),UBERON:0002072 (hypodermis),UBERON:0002120 (pronephros),UBERON:0002190 (subcutaneous adipose tissue),UBERON:0002242 (nucleus pulposus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0002328 (notochord),UBERON:0002331 (umbilical cord),UBERON:0002363 (dura mater),UBERON:0002385 (muscle tissue),UBERON:0002390 (hematopoietic system),UBERON:0002517 (basicranium),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003089 (sclerotome),UBERON:0003112 (olfactory region),UBERON:0003124 (chorion),UBERON:0003220 (metanephric mesenchyme),UBERON:0003422 (mesenchyme of umbilical cord),UBERON:0003688 (omentum)... further results |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004120 (mesoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
