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UBERON:0003422: Difference between revisions

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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
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Revision as of 13:33, 27 June 2012

Name:mesenchyme of umbilical cord
Definition:"a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly]
Xrefs:
links:

EMAPA:26127

SCTID:368069009
Synonyms: "umbilical cord mesenchyme" EXACT [OBOL:automatic]
"Wharton's jelly" EXACT [EMAPA:26127]
Comments:todo - check

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0002331(umbilical cord)



Children

part of:CL:0002569 (mesenchymal stem cell of umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003422 (mesenchyme of umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data