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MCL coexpression mm9:2650: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.064513712786576,0.222823063029657,0.162862766291676,0.337050733102489,0.386140685991988,0.264675322615929,0.286557635189855,0.249134723241571,0.885654695273447,0.828160725876562,0.964658492161895,0.718329300928122,0.342107724764957,0.235502446855714,0,0.418268492413706,0.653001046842843,0.323070004672395,0.254890976010891,0.153628809860867,0,0.0411126530948397,0.409459490058577,0.440895966603002,0.415951907385018,0.0644515323137277,0.155567395918081,0.399379240739151,0.401432828281859,0.0976147801771522,0.0869754197833955,0,0,0,0.0658526498297472,0.0996564903516533,0,0.151839024235742,0,0.182849227049958,0,0,0.17187568289743,0,0,0.073185417993707,0,0,0,0,0,0,0.536397673697129,0.665281732208036,0.479512370320439,0.099424903790252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0397493170902889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400455762093015,0.244454168238681,0.334344752642282,0,0,0,0,0,0,0,0.636184841130051,0.740362479159232,0,0.552245826451349,0.781239300119876,0,0.508973369793549,0.355413075101823,0.61152362002448,0,0.100004302423367,0,0,0.115432590314795,0,0,0.0917293418104957,0,0.0959343498639139,0.0359936389351274,0,0,0,0,0.456960520238567,0,0,0,0.359177737991738,0.531429216089254,0.246109748289831,0,0,0,0,0,0,0,0,0.00436215421958303,0,0,0.100453565299543,0,0,0,0,0,0,0,0,0,0,0,0.0570562417540268,0,0,0,0.449434443932595,0.485548704294405,0,0,0,0,0,0.0780086007519514,0,0.0673136662366435,0.0489423779153975,0,0,0,0.0338533374824575,0,0,0,0,0,0,0.0457271071059921,0.0902067855528672,0.0906941294286938,0,0,0,0,0,0,0,0,0.0773548534010084,0,0,0,0,0.046982063026719,0,0,0,0,0,0,0,0,0,0,0,0,0.0802151268900158,0,0,0,0,0,0.119300527957442,0,0,0,0,0,0,0,0.0628903994365191,0.178756942224084,0.0198477392103483,0,0,0,0,0,0,0,0,0,0.399312438845857,0.420239194365589,0,0.0553169724643419,0,0,0,0,0,0,0,0.0236646040095264,0,0.108252561213616,0,0.111348509539896,0,0,0,0,0,0,0,0,0,0.0208019434811583,0,0,0,0,0,0,0.312639783153065,0,0,0.0111468843472911,0,0,0.0709019855629759,0,0,0,0.167123311310189,0,0.0550887989784388,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267146409463255,0.193070533481811,0.238990764305887,0,0,0,0.0445418537893845,0,0,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0424616899933645,0.0132307922901102,0.0715236385554987,0,0,0.0598244186619439,0,0,0,0,0,0.0190078506178432,0.0887491219977394,1.06652441639305,0.986872196500376,1.01709758158341,0,0,0,0,0,0,0,0,0.264561039419629,0,0,0,0.0112238807058072,0,0,0,0,0,0.0778018037479372,0,0.0551753460451756,0,0.120112766243457,0,0.0978461107777356,0,0,0,0,0,0.169172763866184,0.0476191773904887,0,0,0,0.0395215476904011,0,0,0,0,0.0352754493378881,0,0,0.051727890383797,0.0591270769426617,0,0,0,0,0,0,0.0191674465601542,0,0,0,0.0173113955559951
|coexpression_dpi_cluster_scores_median=0.064513712786576,0.222823063029657,0.162862766291676,0.337050733102489,0.386140685991988,0.264675322615929,0.286557635189855,0.249134723241571,0.885654695273447,0.828160725876562,0.964658492161895,0.718329300928122,0.342107724764957,0.235502446855714,0,0.418268492413706,0.653001046842843,0.323070004672395,0.254890976010891,0.153628809860867,0,0.0411126530948397,0.409459490058577,0.440895966603002,0.415951907385018,0.0644515323137277,0.155567395918081,0.399379240739151,0.401432828281859,0.0976147801771522,0.0869754197833955,0,0,0,0.0658526498297472,0.0996564903516533,0,0.151839024235742,0,0.182849227049958,0,0,0.17187568289743,0,0,0.073185417993707,0,0,0,0,0,0,0.536397673697129,0.665281732208036,0.479512370320439,0.099424903790252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0397493170902889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400455762093015,0.244454168238681,0.334344752642282,0,0,0,0,0,0,0,0.636184841130051,0.740362479159232,0,0.552245826451349,0.781239300119876,0,0.508973369793549,0.355413075101823,0.61152362002448,0,0.100004302423367,0,0,0.115432590314795,0,0,0.0917293418104957,0,0.0959343498639139,0.0359936389351274,0,0,0,0,0.456960520238567,0,0,0,0.359177737991738,0.531429216089254,0.246109748289831,0,0,0,0,0,0,0,0,0.00436215421958303,0,0,0.100453565299543,0,0,0,0,0,0,0,0,0,0,0,0.0570562417540268,0,0,0,0.449434443932595,0.485548704294405,0,0,0,0,0,0.0780086007519514,0,0.0673136662366435,0.0489423779153975,0,0,0,0.0338533374824575,0,0,0,0,0,0,0.0457271071059921,0.0902067855528672,0.0906941294286938,0,0,0,0,0,0,0,0,0.0773548534010084,0,0,0,0,0.046982063026719,0,0,0,0,0,0,0,0,0,0,0,0,0.0802151268900158,0,0,0,0,0,0.119300527957442,0,0,0,0,0,0,0,0.0628903994365191,0.178756942224084,0.0198477392103483,0,0,0,0,0,0,0,0,0,0.399312438845857,0.420239194365589,0,0.0553169724643419,0,0,0,0,0,0,0,0.0236646040095264,0,0.108252561213616,0,0.111348509539896,0,0,0,0,0,0,0,0,0,0.0208019434811583,0,0,0,0,0,0,0.312639783153065,0,0,0.0111468843472911,0,0,0.0709019855629759,0,0,0,0.167123311310189,0,0.0550887989784388,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267146409463255,0.193070533481811,0.238990764305887,0,0,0,0.0445418537893845,0,0,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0424616899933645,0.0132307922901102,0.0715236385554987,0,0,0.0598244186619439,0,0,0,0,0,0.0190078506178432,0.0887491219977394,1.06652441639305,0.986872196500376,1.01709758158341,0,0,0,0,0,0,0,0,0.264561039419629,0,0,0,0.0112238807058072,0,0,0,0,0,0.0778018037479372,0,0.0551753460451756,0,0.120112766243457,0,0.0978461107777356,0,0,0,0,0,0.169172763866184,0.0476191773904887,0,0,0,0.0395215476904011,0,0,0,0,0.0352754493378881,0,0,0.051727890383797,0.0591270769426617,0,0,0,0,0,0,0.0191674465601542,0,0,0,0.0173113955559951
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!3.75e-14!32;CL:0002032!3.75e-14!32;CL:0000037!3.75e-14!32;CL:0000566!3.75e-14!32;CL:0000837!3.75e-14!32;CL:0002371!1.24e-11!118;CL:0000542!2.13e-11!13;CL:0000051!2.13e-11!13;CL:0000838!4.99e-11!12;CL:0000548!5.41e-11!115;CL:0000255!5.41e-11!115;CL:0000738!8.20e-11!17;CL:0002087!8.20e-11!17;CL:0002031!1.19e-10!25;CL:0002320!3.69e-10!46;CL:0000134!3.69e-10!46;CL:0000084!4.02e-10!11;CL:0000827!4.02e-10!11;CL:0000791!3.15e-09!9;CL:0000789!3.15e-09!9;CL:0002420!3.15e-09!9;CL:0002419!3.15e-09!9;CL:0000790!3.15e-09!9;CL:0000219!6.35e-09!54;CL:0002076!1.39e-08!15;CL:0002242!2.19e-08!16;CL:0000624!2.31e-08!8;CL:0000066!8.42e-08!25;CL:0000034!2.60e-07!97;CL:0000893!8.62e-07!6;CL:0002489!8.62e-07!6;CL:0000898!8.62e-07!6;CL:0000809!8.62e-07!6;CL:0000810!8.62e-07!6;CL:0000895!8.62e-07!6;CL:0000808!8.62e-07!6;CL:0000894!8.62e-07!6;CL:0000806!8.62e-07!6;CL:0000807!8.62e-07!6;CL:0000805!8.62e-07!6;CL:0002425!8.62e-07!6;CL:0002436!8.62e-07!6;CL:0002427!8.62e-07!6;CL:0002428!8.62e-07!6;CL:0002429!8.62e-07!6;CL:0002433!8.62e-07!6;CL:0002431!8.62e-07!6;CL:0002432!8.62e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!3.69e-10!46;UBERON:0000344!1.22e-07!15
}}
}}

Revision as of 18:48, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:18227259..18227262,-p1@ENSMUST00000119030
Mm9::chr13:66108480..66108490,+p2@ENSMUST00000069489
Mm9::chr8:53282502..53282545,-p1@ENSMUST00000064897


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell3.75e-1432
hematopoietic oligopotent progenitor cell3.75e-1432
hematopoietic stem cell3.75e-1432
angioblastic mesenchymal cell3.75e-1432
hematopoietic multipotent progenitor cell3.75e-1432
somatic cell1.24e-11118
lymphocyte2.13e-1113
common lymphoid progenitor2.13e-1113
lymphoid lineage restricted progenitor cell4.99e-1112
animal cell5.41e-11115
eukaryotic cell5.41e-11115
leukocyte8.20e-1117
nongranular leukocyte8.20e-1117
hematopoietic lineage restricted progenitor cell1.19e-1025
connective tissue cell3.69e-1046
mesenchymal cell3.69e-1046
T cell4.02e-1011
pro-T cell4.02e-1011
mature alpha-beta T cell3.15e-099
alpha-beta T cell3.15e-099
immature T cell3.15e-099
mature T cell3.15e-099
immature alpha-beta T cell3.15e-099
motile cell6.35e-0954
endo-epithelial cell1.39e-0815
nucleate cell2.19e-0816
CD4-positive, alpha-beta T cell2.31e-088
epithelial cell8.42e-0825
stem cell2.60e-0797
thymocyte8.62e-076
double negative thymocyte8.62e-076
naive T cell8.62e-076
double-positive, alpha-beta thymocyte8.62e-076
CD4-positive, alpha-beta thymocyte8.62e-076
naive thymus-derived CD4-positive, alpha-beta T cell8.62e-076
DN4 thymocyte8.62e-076
DN1 thymic pro-T cell8.62e-076
DN2 thymocyte8.62e-076
DN3 thymocyte8.62e-076
immature single positive thymocyte8.62e-076
early T lineage precursor8.62e-076
mature CD4 single-positive thymocyte8.62e-076
resting double-positive thymocyte8.62e-076
double-positive blast8.62e-076
CD69-positive double-positive thymocyte8.62e-076
CD69-positive, CD4-positive single-positive thymocyte8.62e-076
CD4-positive, CD8-intermediate double-positive thymocyte8.62e-076
CD24-positive, CD4 single-positive thymocyte8.62e-076

Uber Anatomy
Ontology termp-valuen
connective tissue3.69e-1046
mucosa1.22e-0715


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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