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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269611904680974,0,0.252688191418675,0.343574174821928,0.36997255194985,0.130103680446068,0,0,0,0,0,0,0,0,0,0,0.268461186719096,0,0,0,0,0,0,0,0.0514097768499148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485841438481363,0,0,0,0,0,0,0,0.0652566657696677,0.260949644910126,0.58831251521849,0.554577248846304,0.703849131262116,1.11773717725283,0.804779865005798,0.84467599993788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066440322267935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269611904680974,0,0.252688191418675,0.343574174821928,0.36997255194985,0.130103680446068,0,0,0,0,0,0,0,0,0,0,0.268461186719096,0,0,0,0,0,0,0,0.0514097768499148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485841438481363,0,0,0,0,0,0,0,0.0652566657696677,0.260949644910126,0.58831251521849,0.554577248846304,0.703849131262116,1.11773717725283,0.804779865005798,0.84467599993788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066440322267935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0047704;bile-salt sulfotransferase activity;1.01970369145907e-05;20859,100043194!GO:0008202;steroid metabolic process;1.01970369145907e-05;20859,68177,100043194,116852!GO:0044255;cellular lipid metabolic process;0.00112166069657045;20859,68177,100043194,116852!GO:0006629;lipid metabolic process;0.00145471540746546;20859,68177,100043194,116852!GO:0008146;sulfotransferase activity;0.00283600980326611;20859,100043194!GO:0016782;transferase activity, transferring sulfur-containing groups;0.00318037821664022;20859,100043194!GO:0047750;cholestenol delta-isomerase activity;0.0112680018617504;68177!GO:0008514;organic anion transmembrane transporter activity;0.0344751846259603;28250!
|gostat_on_MCL_coexpression=GO:0047704;bile-salt sulfotransferase activity;1.01970369145907e-05;20859,100043194!GO:0008202;steroid metabolic process;1.01970369145907e-05;20859,68177,100043194,116852!GO:0044255;cellular lipid metabolic process;0.00112166069657045;20859,68177,100043194,116852!GO:0006629;lipid metabolic process;0.00145471540746546;20859,68177,100043194,116852!GO:0008146;sulfotransferase activity;0.00283600980326611;20859,100043194!GO:0016782;transferase activity, transferring sulfur-containing groups;0.00318037821664022;20859,100043194!GO:0047750;cholestenol delta-isomerase activity;0.0112680018617504;68177!GO:0008514;organic anion transmembrane transporter activity;0.0344751846259603;28250!
|ontology_enrichment_celltype=CL:0000181!6.21e-10!5;CL:0000417!6.21e-10!5;CL:0000668!6.21e-10!5;CL:0000412!6.21e-10!5;CL:0000182!6.21e-10!5
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!4.84e-39!22;UBERON:0007499!4.84e-39!22;UBERON:0006925!4.84e-39!22;UBERON:0009497!4.84e-39!22;UBERON:0000015!4.84e-39!22;UBERON:0002423!4.84e-39!22;UBERON:0006235!4.84e-39!22;UBERON:0008835!4.84e-39!22;UBERON:0003894!4.84e-39!22;UBERON:0004161!4.84e-39!22;UBERON:0008836!4.84e-39!22;UBERON:0009854!2.84e-37!23;UBERON:0009856!2.84e-37!23;UBERON:0002365!3.67e-34!25;UBERON:0002330!3.67e-34!25;UBERON:0005256!3.78e-21!45;UBERON:0005172!2.86e-19!49;UBERON:0005173!2.86e-19!49;UBERON:0002417!2.86e-19!49;UBERON:0000916!2.86e-19!49;UBERON:0003914!2.31e-17!47;UBERON:0002368!2.18e-15!60;UBERON:0003104!4.18e-15!61;UBERON:0009142!4.18e-15!61;UBERON:0003929!1.42e-14!55;UBERON:0002530!4.68e-14!65;UBERON:0009569!8.19e-14!66;UBERON:0000949!1.69e-12!72;UBERON:0000490!7.76e-12!66;UBERON:0005911!3.06e-11!69;UBERON:0005177!3.25e-11!79;UBERON:0001041!4.57e-11!80;UBERON:0002100!1.35e-09!90;UBERON:0000466!1.41e-09!79;UBERON:0004921!3.78e-07!114;UBERON:0001007!5.46e-07!116;UBERON:0001555!5.46e-07!116;UBERON:0007026!5.46e-07!116;UBERON:0004119!7.80e-07!118;UBERON:0000925!7.80e-07!118;UBERON:0006595!7.80e-07!118
}}
}}

Revision as of 18:58, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:121824059..121824072,+p@chr10:121824059..121824072
+
Mm9::chr10:121886442..121886451,+p@chr10:121886442..121886451
+
Mm9::chr10:74515728..74515751,-p@chr10:74515728..74515751
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Mm9::chr11:101544171..101544183,+p@chr11:101544171..101544183
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Mm9::chr13:4522568..4522601,-p1@Akr1c20
Mm9::chr14:61979211..61979222,-p@chr14:61979211..61979222
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Mm9::chr15:91021416..91021425,-p@chr15:91021416..91021425
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Mm9::chr15:99540899..99540911,+p@chr15:99540899..99540911
+
Mm9::chr18:21119743..21119750,+p11@Rnf125
Mm9::chr19:8040499..8040527,-p1@Slc22a27
Mm9::chr19:8337092..8337139,-p2@Slc22a29
Mm9::chr1:138589429..138589436,+p@chr1:138589429..138589436
+
Mm9::chr1:60653502..60653505,+p@chr1:60653502..60653505
+
Mm9::chr5:146890743..146890764,+p2@Cyp3a59
Mm9::chr5:90879180..90879184,-p@chr5:90879180..90879184
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Mm9::chr6:141804045..141804091,-p@chr6:141804045..141804091
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Mm9::chr6:141804713..141804755,-p1@Slco1a4
Mm9::chr6:90502198..90502200,+p@chr6:90502198..90502200
+
Mm9::chr7:14209322..14209331,+p2@Sult2a5
Mm9::chr7:14209332..14209350,+p1@Sult2a5
Mm9::chr7:14318851..14318853,+p1@Sult2a2
Mm9::chr7:14422759..14422760,-p1@Sult2a1
Mm9::chr7:14708391..14708402,-p1@Sult2a3
Mm9::chr7:14708421..14708424,-p2@Sult2a3
Mm9::chr7:27724396..27724409,-p1@Cyp2a22
Mm9::chr8:121952828..121952837,-p@chr8:121952828..121952837
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Mm9::chr8:37795154..37795170,-p@chr8:37795154..37795170
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Mm9::chr8:66307042..66307053,-p@chr8:66307042..66307053
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Mm9::chr8:72596930..72596939,+p@chr8:72596930..72596939
+
Mm9::chr9:48148765..48148768,-p10@Fam55b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0047704bile-salt sulfotransferase activity1.01970369145907e-05
GO:0008202steroid metabolic process1.01970369145907e-05
GO:0044255cellular lipid metabolic process0.00112166069657045
GO:0006629lipid metabolic process0.00145471540746546
GO:0008146sulfotransferase activity0.00283600980326611
GO:0016782transferase activity, transferring sulfur-containing groups0.00318037821664022
GO:0047750cholestenol delta-isomerase activity0.0112680018617504
GO:0008514organic anion transmembrane transporter activity0.0344751846259603



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell6.21e-105
endopolyploid cell6.21e-105
parenchymal cell6.21e-105
polyploid cell6.21e-105
hepatocyte6.21e-105

Uber Anatomy
Ontology termp-valuen
liver4.84e-3922
epithelial sac4.84e-3922
digestive gland4.84e-3922
epithelium of foregut-midgut junction4.84e-3922
anatomical boundary4.84e-3922
hepatobiliary system4.84e-3922
foregut-midgut junction4.84e-3922
hepatic diverticulum4.84e-3922
liver primordium4.84e-3922
septum transversum4.84e-3922
liver bud4.84e-3922
digestive tract diverticulum2.84e-3723
sac2.84e-3723
exocrine gland3.67e-3425
exocrine system3.67e-3425
trunk mesenchyme3.78e-2145
abdomen element2.86e-1949
abdominal segment element2.86e-1949
abdominal segment of trunk2.86e-1949
abdomen2.86e-1949
epithelial tube2.31e-1747
endocrine gland2.18e-1560
mesenchyme4.18e-1561
entire embryonic mesenchyme4.18e-1561
gut epithelium1.42e-1455
gland4.68e-1465
subdivision of trunk8.19e-1466
endocrine system1.69e-1272
unilaminar epithelium7.76e-1266
endo-epithelium3.06e-1169
trunk region element3.25e-1179
foregut4.57e-1180
trunk1.35e-0990
immaterial anatomical entity1.41e-0979
subdivision of digestive tract3.78e-07114
digestive system5.46e-07116
digestive tract5.46e-07116
primitive gut5.46e-07116
endoderm-derived structure7.80e-07118
endoderm7.80e-07118
presumptive endoderm7.80e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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