FFCP PHASE1:Mm9::chr4:134073493..134073502,-: Difference between revisions
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|id=chr4:134073493..134073502,- | |id=chr4:134073493..134073502,- | ||
|ontology_enrichment_celltype=CL:0002614!2.43e-14!3;CL:0002494!8.06e-14!3;CL:0000737!8.06e-14!3;CL:0000746!8.06e-14!3;CL:0000513!8.06e-14!3;CL:0002610!3.73e-07!3;CL:0000680!3.85e-07!6;CL:0000183!3.85e-07!6;CL:0000187!3.85e-07!6;CL:0000056!3.85e-07!6 | |ontology_enrichment_celltype=CL:0002614!2.43e-14!3;CL:0002494!8.06e-14!3;CL:0000737!8.06e-14!3;CL:0000746!8.06e-14!3;CL:0000513!8.06e-14!3;CL:0002610!3.73e-07!3;CL:0000680!3.85e-07!6;CL:0000183!3.85e-07!6;CL:0000187!3.85e-07!6;CL:0000056!3.85e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002614,8.97e-44,3;CL:0002610,1.01e-20,3;CL:0000117,2.52e-16,23;CL:0000337,2.52e-16,23;CL:0000393,7.80e-14,39;CL:0000211,7.80e-14,39;CL:0000540,1.59e-11,33;CL:0000047,1.59e-11,33;CL:0000031,1.59e-11,33;CL:0000404,1.59e-11,33;CL:0002319,6.12e-09,43;CL:0000221,9.58e-09,44;CL:0000133,9.58e-09,44;CL:0002321,7.20e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002038!2.43e-14!3;UBERON:0002308!2.43e-14!3;UBERON:0009663!2.43e-14!3;UBERON:0009661!2.43e-14!3;UBERON:0006331!2.43e-14!3;UBERON:0000125!2.43e-14!3;UBERON:0002950!7.06e-11!4;UBERON:0001891!7.06e-11!4;UBERON:0009616!7.06e-11!4;UBERON:0007100!4.21e-08!18;UBERON:0000948!4.21e-08!18;UBERON:0005498!4.21e-08!18;UBERON:0004140!4.21e-08!18;UBERON:0009881!4.21e-08!18;UBERON:0004141!4.21e-08!18;UBERON:0003084!4.21e-08!18;UBERON:0007005!4.21e-08!18;UBERON:0004139!4.21e-08!18;UBERON:0004291!4.21e-08!18;UBERON:0002298!2.15e-07!6;UBERON:0004684!3.73e-07!3;UBERON:0002275!3.73e-07!3 | |ontology_enrichment_uberon=UBERON:0002038!2.43e-14!3;UBERON:0002308!2.43e-14!3;UBERON:0009663!2.43e-14!3;UBERON:0009661!2.43e-14!3;UBERON:0006331!2.43e-14!3;UBERON:0000125!2.43e-14!3;UBERON:0002950!7.06e-11!4;UBERON:0001891!7.06e-11!4;UBERON:0009616!7.06e-11!4;UBERON:0007100!4.21e-08!18;UBERON:0000948!4.21e-08!18;UBERON:0005498!4.21e-08!18;UBERON:0004140!4.21e-08!18;UBERON:0009881!4.21e-08!18;UBERON:0004141!4.21e-08!18;UBERON:0003084!4.21e-08!18;UBERON:0007005!4.21e-08!18;UBERON:0004139!4.21e-08!18;UBERON:0004291!4.21e-08!18;UBERON:0002298!2.15e-07!6;UBERON:0004684!3.73e-07!3;UBERON:0002275!3.73e-07!3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,8.97e-44,3;UBERON:0009663,8.97e-44,3;UBERON:0009661,8.97e-44,3;UBERON:0000125,8.97e-44,3;UBERON:0002308,8.97e-44,3;UBERON:0002950,4.34e-33,4;UBERON:0001891,4.34e-33,4;UBERON:0009616,4.34e-33,4;UBERON:0010286,4.34e-33,4;UBERON:0004684,1.01e-20,3;UBERON:0002275,1.01e-20,3;UBERON:0002420,5.28e-17,8;UBERON:0007245,5.28e-17,8;UBERON:0010009,5.28e-17,8;UBERON:0010011,5.28e-17,8;UBERON:0000454,5.28e-17,8;UBERON:0000073,3.45e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02903774414379,0.286533439938757,0.515672092277442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44755812830007,4.76180253094355,0,0,0,1.11673199600552,2.25105044012672,1.06958773443767,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0.164167464079095,0,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0,0,0.0574354689556133,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02903774414379,0.286533439938757,0.515672092277442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44755812830007,4.76180253094355,0,0,0,1.11673199600552,2.25105044012672,1.06958773443767,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0.164167464079095,0,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0,0,0.0574354689556133,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:134073493..134073502,- | |short_description=p@chr4:134073493..134073502,- | ||
}} | }} |
Revision as of 04:14, 15 November 2012
Short description: | p@chr4:134073493..134073502, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:134073493..134073502, - |
Coexpression cluster: | MCL_coexpression_mm9:751 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 8.97e-44 | 3 |
raphe nuclei neuron | 1.01e-20 | 3 |
CNS neuron (sensu Vertebrata) | 2.52e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.52e-16 | 23 |
electrically responsive cell | 7.80e-14 | 39 |
electrically active cell | 7.80e-14 | 39 |
neuron | 1.59e-11 | 33 |
neuronal stem cell | 1.59e-11 | 33 |
neuroblast | 1.59e-11 | 33 |
electrically signaling cell | 1.59e-11 | 33 |
neural cell | 6.12e-09 | 43 |
ectodermal cell | 9.58e-09 | 44 |
neurectodermal cell | 9.58e-09 | 44 |
embryonic cell | 7.20e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 8.97e-44 | 3 |
telencephalic nucleus | 8.97e-44 | 3 |
midbrain nucleus | 8.97e-44 | 3 |
neural nucleus | 8.97e-44 | 3 |
nucleus of brain | 8.97e-44 | 3 |
regional part of midbrain | 4.34e-33 | 4 |
midbrain | 4.34e-33 | 4 |
presumptive midbrain | 4.34e-33 | 4 |
midbrain neural tube | 4.34e-33 | 4 |
raphe nuclei | 1.01e-20 | 3 |
reticular formation | 1.01e-20 | 3 |
basal ganglion | 5.28e-17 | 8 |
nuclear complex of neuraxis | 5.28e-17 | 8 |
aggregate regional part of brain | 5.28e-17 | 8 |
collection of basal ganglia | 5.28e-17 | 8 |
cerebral subcortex | 5.28e-17 | 8 |
regional part of nervous system | 3.45e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.