Coexpression cluster:C1842: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=BATF#10538;4:19.4862414338429:1.37275300118359e-05:0.000332180145251652!BCL11A#53335;4:22.6955640828856:7.49488101632307e-06:0.0002143954747915!BCL3#602;4:27.6376822429907:3.425174836939e-06:0.000114142257433016!BRCA1#672;4:16.147384514579:2.89130901545765e-05:0.000605141126784331!CEBPB#1051;4:6.37691810065985:0.00111394417667732:0.0076549030048692!EBF1#1879;4:7.1251734772552:0.000723053104677421:0.00577154870065769!EP300#2033;5:6.7739417262232:7.00901578206049e-05:0.00110877703614452!FOS#2353;4:7.19836424711553:0.000694785845338251:0.00559724922101833!FOSL1#8061;4:31.7708637730984:1.96715033715934e-06:7.22642328746341e-05!FOSL2#2355;4:13.5441604836494:5.7953819349229e-05:0.000964871503110812!GATA2#2624;4:10.1959453868432:0.000177544777760982:0.00215737045312149!GTF2F1#2962;4:10.1917287014061:0.00017783388942764:0.00215912503812291!IRF4#3662;4:17.5316101493953:2.08739444052064e-05:0.000460899340324598!JUN#3725;4:10.0102633538691:0.000190853134780107:0.00230593597215404!JUNB#3726;4:24.4885061278569:5.54076322307085e-06:0.000167828239632917!JUND#3727;4:5.59573115349682:0.00184959330175546:0.0109351641574887!MAX#4149;4:5.1620444072057:0.00252630900948518:0.0140000629651715!MEF2A#4205;4:14.9945847277152:3.876195075647e-05:0.000728104204146577!MXI1#4601;4:7.96925730300744:0.000466854638007017:0.00429546573331115!MYC#4609;4:4.17782549728752:0.00569196903682344:0.0256854283717941!NFKB1#4790;4:4.39045073935507:0.00470773269252496:0.0222053515795598!NR3C1#2908;4:11.9784186649384:9.4122920812787e-05:0.00136548183452794!PAX5#5079;4:5.33565242494226:0.00222338958618779:0.0127797790309227!POU2F2#5452;4:7.28489924619402:0.000663122328874386:0.00542629733646572!PRDM1#639;4:105.464764621969:1.63839404354338e-08:1.1899320967568e-06!RAD21#5885;4:8.28402711636506:0.000401162263912245:0.00386753306385405!RFX5#5993;4:9.63832866175608:0.00022148012581572:0.00249715673756536!SIN3A#25942;4:4.32710778145211:0.00497705285576288:0.0232467988910116!SMARCA4#6597;4:125.41272264631:8.195036471498e-09:6.32113304318153e-07!SMARCC1#6599;4:34.9306874557052:1.34857873968749e-06:5.3108678353779e-05!SMC3#9126;4:12.0359462759463:9.2360978468394e-05:0.00134365346570004!SP1#6667;4:4.55870510251272:0.0040757356578168:0.0194875134535883!STAT1#6772;4:16.5652699977594:2.61308619905866e-05:0.000563976254481271!STAT3#6774;5:10.5194649971542:7.759040745861e-06:0.00022056245412547!TCF12#6938;5:10.6344649021864:7.34844389925727e-06:0.000211248040846278!TCF7L2#6934;4:8.61614125050988:0.000343896972598245:0.00347352571771645!TFAP2C#7022;4:8.64738288788818:0.000339051887817405:0.00344893738304879!USF2#7392;4:10.3937579080557:0.000164617972868753:0.0020267047587457 | |tf_chipseq_enrich=BATF#10538;4:19.4862414338429:1.37275300118359e-05:0.000332180145251652!BCL11A#53335;4:22.6955640828856:7.49488101632307e-06:0.0002143954747915!BCL3#602;4:27.6376822429907:3.425174836939e-06:0.000114142257433016!BRCA1#672;4:16.147384514579:2.89130901545765e-05:0.000605141126784331!CEBPB#1051;4:6.37691810065985:0.00111394417667732:0.0076549030048692!EBF1#1879;4:7.1251734772552:0.000723053104677421:0.00577154870065769!EP300#2033;5:6.7739417262232:7.00901578206049e-05:0.00110877703614452!FOS#2353;4:7.19836424711553:0.000694785845338251:0.00559724922101833!FOSL1#8061;4:31.7708637730984:1.96715033715934e-06:7.22642328746341e-05!FOSL2#2355;4:13.5441604836494:5.7953819349229e-05:0.000964871503110812!GATA2#2624;4:10.1959453868432:0.000177544777760982:0.00215737045312149!GTF2F1#2962;4:10.1917287014061:0.00017783388942764:0.00215912503812291!IRF4#3662;4:17.5316101493953:2.08739444052064e-05:0.000460899340324598!JUN#3725;4:10.0102633538691:0.000190853134780107:0.00230593597215404!JUNB#3726;4:24.4885061278569:5.54076322307085e-06:0.000167828239632917!JUND#3727;4:5.59573115349682:0.00184959330175546:0.0109351641574887!MAX#4149;4:5.1620444072057:0.00252630900948518:0.0140000629651715!MEF2A#4205;4:14.9945847277152:3.876195075647e-05:0.000728104204146577!MXI1#4601;4:7.96925730300744:0.000466854638007017:0.00429546573331115!MYC#4609;4:4.17782549728752:0.00569196903682344:0.0256854283717941!NFKB1#4790;4:4.39045073935507:0.00470773269252496:0.0222053515795598!NR3C1#2908;4:11.9784186649384:9.4122920812787e-05:0.00136548183452794!PAX5#5079;4:5.33565242494226:0.00222338958618779:0.0127797790309227!POU2F2#5452;4:7.28489924619402:0.000663122328874386:0.00542629733646572!PRDM1#639;4:105.464764621969:1.63839404354338e-08:1.1899320967568e-06!RAD21#5885;4:8.28402711636506:0.000401162263912245:0.00386753306385405!RFX5#5993;4:9.63832866175608:0.00022148012581572:0.00249715673756536!SIN3A#25942;4:4.32710778145211:0.00497705285576288:0.0232467988910116!SMARCA4#6597;4:125.41272264631:8.195036471498e-09:6.32113304318153e-07!SMARCC1#6599;4:34.9306874557052:1.34857873968749e-06:5.3108678353779e-05!SMC3#9126;4:12.0359462759463:9.2360978468394e-05:0.00134365346570004!SP1#6667;4:4.55870510251272:0.0040757356578168:0.0194875134535883!STAT1#6772;4:16.5652699977594:2.61308619905866e-05:0.000563976254481271!STAT3#6774;5:10.5194649971542:7.759040745861e-06:0.00022056245412547!TCF12#6938;5:10.6344649021864:7.34844389925727e-06:0.000211248040846278!TCF7L2#6934;4:8.61614125050988:0.000343896972598245:0.00347352571771645!TFAP2C#7022;4:8.64738288788818:0.000339051887817405:0.00344893738304879!USF2#7392;4:10.3937579080557:0.000164617972868753:0.0020267047587457 | ||
|tfbs_overrepresentation=0.23317,0.0958562,0.877965,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.856615,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.183986,0.436695,0.38341,0.104918,0.323505,0.790836,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.769004,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.779726,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.754769,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.769028,0.875285,0.115057,0.814323,0.161661,0.944588,0.935701,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.675971,0.487888,0.568246,0.486439,0.720623,0.796904,0.410803,0.43779,0.0576112,0.569955,0.766049,0.780281,0.292173,0.0406515,0.284119,0.0144364,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.714193,0.706516,0.537972,0.591562,0.668584,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.761311,0.592924,0.438692,0.660225,0.619033,0.541742,0.762222,0.463603,0.285074,0.870229,0.943261,0.899362,0.101555,0.362164,0.289863,0.507647,0.721501,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.909149,0.766165,0.588284,0.843506,0.732646,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.826323,0.773103,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.128,0.418989,0.935814,0.606622,0.350461,0.495024,0.307173,0.246694,0.752605,0.598317,0.666615,0.597346,0.702113,0.961692,0.493489,0.229501,0.230597,0.555864,0.544572,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.199515,0.688249,0.708682,0.427794,0.398041,0.170667,0.347879,0.58021,0.593219,0.529253,0.64728,0.903142,0.319495,0.711229,0.827435,0.616333,0.407113,0.498776,0.738012,0.423517,0.224914,0.636791,0.706243,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.809533,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.621499,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.412647,0.102448,0.550877,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,0.294266,0.0790025,0.310539,0.580279,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.7034,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.510703,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.735114,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,0.430936,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,0.62577,0.211515,0.125701,0.175283,0.204954,0.209341,0.855975,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.893893,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,0.733648,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.98236,0.989834,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.430769,0.240825,0.3033,0.336623,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.689826,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.0850129,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.769574,0.262486,0.294204,0.131936,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.279263,0.336564,0.35463,0.581771,0.800557,0.0594155,0.587524,0.208795,0.0713793,0.212621,0.594469,0.53612,0.629713,0.581874,0.355154,0.730614,0.619037,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.550495,0.764863,0.820986,0.610475,0.881697,0.561689,0.672416,0.321844,0.623136,0.708698,0.96913,0.967174,0.349068,0.70429,0.798758,0.557035,0.427789,0.689998,0.737642,0.886619,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.651196,0.392155,0.626931,0.371758,0.91821,0.562417,0.890566,0.85279,0.254547,0.901563,0.821811,0.1082,0.931136,0.541378,0.922893,0.00088752,0.922144,0.898765,0.914902,0.315485,0.311289,0.318577,0.4488,0.389888,0.603509,0.511254,0.553178,0.246387,0.224252,0.587237,0.155054,0.466978,0.518234,0.0365373,0.353942,0.192234,0.427276,0.747776,0.131598,0.283682,0.424668,0.919825,0.215833,0.583101,0.702164,0.477016,0.831202,0.498956,0.792095,0.55798,0.708394,0.0567757,0.723248,0.34194,0.592696,0.592314,0.644904,0.89036,0.763919,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.00956367,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.528646,0.361524,0.31558,0.412744,0.185983,0.62698,0.513592,0.415367,0.815658,0.45585,0.36864,0.538745,0.125335,0.453004,0.680686,0.557093,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.694478,0.306231,0.298354,0.646049,0.453817,0.457741,0.641611,0.426239,0.748909,0.656093,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.152974,0.307426,0.0736126,0.557732,0.490527,0.0384956,0.44799,0.813041,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.0899804,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.0854897,0.54721,0.388459,0.321362,0.0780866,0.280757,0.301366,0.340343,0.343265,0.154685,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.104001,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.0814929,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476 | |tfbs_overrepresentation=0.23317,0.0958562,0.877965,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.856615,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.183986,0.436695,0.38341,0.104918,0.323505,0.790836,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.769004,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.779726,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.754769,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.769028,0.875285,0.115057,0.814323,0.161661,0.944588,0.935701,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.675971,0.487888,0.568246,0.486439,0.720623,0.796904,0.410803,0.43779,0.0576112,0.569955,0.766049,0.780281,0.292173,0.0406515,0.284119,0.0144364,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.714193,0.706516,0.537972,0.591562,0.668584,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.761311,0.592924,0.438692,0.660225,0.619033,0.541742,0.762222,0.463603,0.285074,0.870229,0.943261,0.899362,0.101555,0.362164,0.289863,0.507647,0.721501,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.909149,0.766165,0.588284,0.843506,0.732646,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.826323,0.773103,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.128,0.418989,0.935814,0.606622,0.350461,0.495024,0.307173,0.246694,0.752605,0.598317,0.666615,0.597346,0.702113,0.961692,0.493489,0.229501,0.230597,0.555864,0.544572,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.199515,0.688249,0.708682,0.427794,0.398041,0.170667,0.347879,0.58021,0.593219,0.529253,0.64728,0.903142,0.319495,0.711229,0.827435,0.616333,0.407113,0.498776,0.738012,0.423517,0.224914,0.636791,0.706243,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.809533,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.621499,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.412647,0.102448,0.550877,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,0.294266,0.0790025,0.310539,0.580279,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.7034,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.510703,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.735114,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,0.430936,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,0.62577,0.211515,0.125701,0.175283,0.204954,0.209341,0.855975,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.893893,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,0.733648,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.98236,0.989834,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.430769,0.240825,0.3033,0.336623,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.689826,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.0850129,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.769574,0.262486,0.294204,0.131936,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.279263,0.336564,0.35463,0.581771,0.800557,0.0594155,0.587524,0.208795,0.0713793,0.212621,0.594469,0.53612,0.629713,0.581874,0.355154,0.730614,0.619037,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.550495,0.764863,0.820986,0.610475,0.881697,0.561689,0.672416,0.321844,0.623136,0.708698,0.96913,0.967174,0.349068,0.70429,0.798758,0.557035,0.427789,0.689998,0.737642,0.886619,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.651196,0.392155,0.626931,0.371758,0.91821,0.562417,0.890566,0.85279,0.254547,0.901563,0.821811,0.1082,0.931136,0.541378,0.922893,0.00088752,0.922144,0.898765,0.914902,0.315485,0.311289,0.318577,0.4488,0.389888,0.603509,0.511254,0.553178,0.246387,0.224252,0.587237,0.155054,0.466978,0.518234,0.0365373,0.353942,0.192234,0.427276,0.747776,0.131598,0.283682,0.424668,0.919825,0.215833,0.583101,0.702164,0.477016,0.831202,0.498956,0.792095,0.55798,0.708394,0.0567757,0.723248,0.34194,0.592696,0.592314,0.644904,0.89036,0.763919,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.00956367,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.528646,0.361524,0.31558,0.412744,0.185983,0.62698,0.513592,0.415367,0.815658,0.45585,0.36864,0.538745,0.125335,0.453004,0.680686,0.557093,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.694478,0.306231,0.298354,0.646049,0.453817,0.457741,0.641611,0.426239,0.748909,0.656093,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.152974,0.307426,0.0736126,0.557732,0.490527,0.0384956,0.44799,0.813041,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.0899804,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.0854897,0.54721,0.388459,0.321362,0.0780866,0.280757,0.301366,0.340343,0.343265,0.154685,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.104001,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.0814929,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476 | ||
|tfbs_overrepresentation_for_novel_motifs=0.508327,0.0561813,0.500341,1.57627,0.454983,0.653236,0.733342,0.324142,0.321368,0.106358,0.621241,0.778743,0.274093,0.721271,0.453496,0.478935,0.963929,1.80748,1.42981,1.54297,0.500405,0.121147,0.645033,1.14094,0.549618,0.802434,0.25115,0.642741,0.458349,1.22891,0.598009,1.00172,0.359091,1.38854,1.0713,0.0526856,0.413782,0.654459,1.78381,0.815792,0.415749,0.580638,0.414516,0.451846,0.0606304,0.533483,0.734485,0.609718,0.124583,0.458489,0.817229,0.746838,0.560115,1.08035,1.2359,0.724351,0.4631,0.689906,0.233662,0.688844,1.04369,0.736968,0.321912,0.935408,0.755773,0.899893,1.32544,1.69665,0.991065,1.53343,0.566575,0.880217,0.189341,1.23387,0.269111,0.255232,0.240727,0.917983,0.987729,0.543014,0.293154,0.934302,0.755403,0.327263,1.18161,0.0719601,0.166306,0.228496,0.844289,1.79645,1.41984,1.15413,1.01895,0.367039,0.455791,0.381528,0.28626,1.06255,0.849074,0.211081,0.389604,1.01316,1.05685,0.967698,0.88799,0.616433,0.951411,0.717647,0.549347,0.437618,0.512457,1.05402,0.494368,0.631235,1.37132,0.412056,0.084145,0.596731,0.897476,0.968277,1.22546,0.841768,0.650322,0.767198,1.48307,0.918767,0.72668,1.02407,1.2687,0.382577,1.15483,0.601055,1.28328,0.763715,1.43285,0.221105,0.591636,0.643339,1.38998,2.25246,1.84906,1.35224,0.728494,1.05895,0.889806,0.680988,0.87256,2.09294,0.577088,0.363423,0.177807,0.126633,1.15522,0.312599,1.74559,1.56426,0.827475,0.439798,0.54968,0.518696,1.35101,1.13636,2.25941,0.522159,0.906429,0.754576,0.35004,0.731946,0.443702 | |||
}} | }} | ||
Revision as of 15:08, 26 November 2012
Full id: C1842_Preadipocyte_epithelioid_Synoviocyte_tenocyte_renal_Fibroblast_spindle
Phase1 CAGE Peaks
| Hg19::chr1:200379777..200379783,- | p@chr1:200379777..200379783 - |
| Hg19::chr1:200452510..200452521,- | p@chr1:200452510..200452521 - |
| Hg19::chr1:200452556..200452567,- | p@chr1:200452556..200452567 - |
| Hg19::chr1:200452599..200452614,- | p@chr1:200452599..200452614 - |
| Hg19::chr1:200452620..200452639,- | p@chr1:200452620..200452639 - |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 2.65e-18 | 76 |
| preadipocyte | 4.09e-18 | 12 |
| skin fibroblast | 1.25e-14 | 23 |
| preadipocyte of the breast | 7.66e-09 | 3 |
| fibrocyte | 2.00e-08 | 3 |
| attachment cell | 2.00e-08 | 3 |
| tendon cell | 2.00e-08 | 3 |
| omentum preadipocyte | 2.37e-08 | 3 |
| cell of skeletal muscle | 5.47e-08 | 9 |
| Schwann cell | 4.58e-07 | 2 |
| GAG secreting cell | 9.99e-07 | 9 |
| carbohydrate secreting cell | 9.99e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| dense regular connective tissue | 2.00e-08 | 3 |
| tendon | 2.00e-08 | 3 |
| regular connective tissue | 2.00e-08 | 3 |
| integument | 8.41e-08 | 46 |
| integumental system | 8.41e-08 | 46 |
| articulation | 1.53e-07 | 8 |
| skeletal joint | 1.53e-07 | 8 |
| articular system | 1.53e-07 | 8 |
| skin of body | 7.94e-07 | 41 |
| Ontology term | p-value | n |
|---|---|---|
| musculoskeletal system disease | 7.78e-08 | 5 |
| myotonic disease | 7.78e-08 | 5 |
| muscle tissue disease | 7.78e-08 | 5 |
| myopathy | 7.78e-08 | 5 |
| muscular disease | 7.78e-08 | 5 |
| myotonic dystrophy | 7.78e-08 | 5 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BATF#10538 | 4 | 19.4862414338429 | 1.37275300118359e-05 | 0.000332180145251652 |
| BCL11A#53335 | 4 | 22.6955640828856 | 7.49488101632307e-06 | 0.0002143954747915 |
| BCL3#602 | 4 | 27.6376822429907 | 3.425174836939e-06 | 0.000114142257433016 |
| BRCA1#672 | 4 | 16.147384514579 | 2.89130901545765e-05 | 0.000605141126784331 |
| CEBPB#1051 | 4 | 6.37691810065985 | 0.00111394417667732 | 0.0076549030048692 |
| EBF1#1879 | 4 | 7.1251734772552 | 0.000723053104677421 | 0.00577154870065769 |
| EP300#2033 | 5 | 6.7739417262232 | 7.00901578206049e-05 | 0.00110877703614452 |
| FOS#2353 | 4 | 7.19836424711553 | 0.000694785845338251 | 0.00559724922101833 |
| FOSL1#8061 | 4 | 31.7708637730984 | 1.96715033715934e-06 | 7.22642328746341e-05 |
| FOSL2#2355 | 4 | 13.5441604836494 | 5.7953819349229e-05 | 0.000964871503110812 |
| GATA2#2624 | 4 | 10.1959453868432 | 0.000177544777760982 | 0.00215737045312149 |
| GTF2F1#2962 | 4 | 10.1917287014061 | 0.00017783388942764 | 0.00215912503812291 |
| IRF4#3662 | 4 | 17.5316101493953 | 2.08739444052064e-05 | 0.000460899340324598 |
| JUN#3725 | 4 | 10.0102633538691 | 0.000190853134780107 | 0.00230593597215404 |
| JUNB#3726 | 4 | 24.4885061278569 | 5.54076322307085e-06 | 0.000167828239632917 |
| JUND#3727 | 4 | 5.59573115349682 | 0.00184959330175546 | 0.0109351641574887 |
| MAX#4149 | 4 | 5.1620444072057 | 0.00252630900948518 | 0.0140000629651715 |
| MEF2A#4205 | 4 | 14.9945847277152 | 3.876195075647e-05 | 0.000728104204146577 |
| MXI1#4601 | 4 | 7.96925730300744 | 0.000466854638007017 | 0.00429546573331115 |
| MYC#4609 | 4 | 4.17782549728752 | 0.00569196903682344 | 0.0256854283717941 |
| NFKB1#4790 | 4 | 4.39045073935507 | 0.00470773269252496 | 0.0222053515795598 |
| NR3C1#2908 | 4 | 11.9784186649384 | 9.4122920812787e-05 | 0.00136548183452794 |
| PAX5#5079 | 4 | 5.33565242494226 | 0.00222338958618779 | 0.0127797790309227 |
| POU2F2#5452 | 4 | 7.28489924619402 | 0.000663122328874386 | 0.00542629733646572 |
| PRDM1#639 | 4 | 105.464764621969 | 1.63839404354338e-08 | 1.1899320967568e-06 |
| RAD21#5885 | 4 | 8.28402711636506 | 0.000401162263912245 | 0.00386753306385405 |
| RFX5#5993 | 4 | 9.63832866175608 | 0.00022148012581572 | 0.00249715673756536 |
| SIN3A#25942 | 4 | 4.32710778145211 | 0.00497705285576288 | 0.0232467988910116 |
| SMARCA4#6597 | 4 | 125.41272264631 | 8.195036471498e-09 | 6.32113304318153e-07 |
| SMARCC1#6599 | 4 | 34.9306874557052 | 1.34857873968749e-06 | 5.3108678353779e-05 |
| SMC3#9126 | 4 | 12.0359462759463 | 9.2360978468394e-05 | 0.00134365346570004 |
| SP1#6667 | 4 | 4.55870510251272 | 0.0040757356578168 | 0.0194875134535883 |
| STAT1#6772 | 4 | 16.5652699977594 | 2.61308619905866e-05 | 0.000563976254481271 |
| STAT3#6774 | 5 | 10.5194649971542 | 7.759040745861e-06 | 0.00022056245412547 |
| TCF12#6938 | 5 | 10.6344649021864 | 7.34844389925727e-06 | 0.000211248040846278 |
| TCF7L2#6934 | 4 | 8.61614125050988 | 0.000343896972598245 | 0.00347352571771645 |
| TFAP2C#7022 | 4 | 8.64738288788818 | 0.000339051887817405 | 0.00344893738304879 |
| USF2#7392 | 4 | 10.3937579080557 | 0.000164617972868753 | 0.0020267047587457 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
