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CL:0000188

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Name:cell of skeletal muscle
Namespace:FANTOM
Definition:"A somatic cell located in skeletal muscle." [GOC:tfm]
Xrefs:
links:

BTO:0004392

FMA:9727


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002371(somatic cell)
part_of:UBERON:0001134(skeletal muscle tissue)



Children


is a:CL:0000355 (multi-potent skeletal muscle stem cell),CL:0000594 (skeletal muscle satellite cell)
derives from:FF:0000162 (human skeletal muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
  • 11281-116I3 (Skeletal Muscle Cells, donor1)
  • 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
  • 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
  • 11358-117H8 (Skeletal Muscle Cells, donor2)
  • 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
  • 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
  • 11430-118G8 (Skeletal Muscle Cells, donor3)
  • 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
  • 11451-119A2 (Skeletal Muscle Cells, donor4)

... further results Mouse (Mus musculus)

  • 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
  • 11281-116I3 (Skeletal Muscle Cells, donor1)
  • 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
  • 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
  • 11358-117H8 (Skeletal Muscle Cells, donor2)
  • 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
  • 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
  • 11430-118G8 (Skeletal Muscle Cells, donor3)
  • 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
  • 11451-119A2 (Skeletal Muscle Cells, donor4)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000188 (cell of skeletal muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data