Coexpression cluster:C2150: Difference between revisions
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| ||
|tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,0.581696,0.741427,0.534346,0.739643,0.821651,1.02453,1.01802,0.462021,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.223552,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,1.23824,0.0842336,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.539378,0.53106,0.314427,1.49501,0.822818,0.694903,0.515703,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,0.692875,1.32819,2.42873,0.859396,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,1.72726,0.6318,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.934671,1.15558,0.939507,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,1.28386,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,1.27972,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,1.15964,1.24863,0.68598,1.37788,0.852645,1.52813,0.283547,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,1.11576,1.23342,1.00204,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,1.91266 | |tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,0.581696,0.741427,0.534346,0.739643,0.821651,1.02453,1.01802,0.462021,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.223552,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,1.23824,0.0842336,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.539378,0.53106,0.314427,1.49501,0.822818,0.694903,0.515703,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,0.692875,1.32819,2.42873,0.859396,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,1.72726,0.6318,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.934671,1.15558,0.939507,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,1.28386,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,1.27972,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,1.15964,1.24863,0.68598,1.37788,0.852645,1.52813,0.283547,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,1.11576,1.23342,1.00204,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,1.91266 | ||
|tfbs_overrepresentation_jaspar=MA0003.1;1.45381,MA0004.1;0.71247,MA0006.1;0.532262,MA0007.1;0.6918,MA0009.1;1.20602,MA0014.1;1.86845,MA0017.1;0.577281,MA0019.1;0.873355,MA0024.1;1.09684,MA0025.1;1.34373,MA0027.1;2.83281,MA0028.1;1.35734,MA0029.1;1.11704,MA0030.1;1.10506,MA0031.1;1.03735,MA0038.1;0.824639,MA0040.1;1.12314,MA0041.1;0.732902,MA0042.1;0.697662,MA0043.1;1.20635,MA0046.1;1.19471,MA0048.1;1.30988,MA0050.1;0.69864,MA0051.1;0.820063,MA0052.1;1.12718,MA0055.1;1.28887,MA0056.1;0,MA0057.1;0.248209,MA0058.1;1.47358,MA0059.1;0.604454,MA0060.1;1.80156,MA0061.1;1.68681,MA0063.1;0,MA0066.1;0.825101,MA0067.1;1.53181,MA0068.1;0.313194,MA0069.1;1.19071,MA0070.1;1.17908,MA0071.1;0.782546,MA0072.1;1.1744,MA0073.1;0.0343867,MA0074.1;0.819248,MA0076.1;0.623864,MA0077.1;1.16637,MA0078.1;0.926725,MA0081.1;0.604638,MA0083.1;1.21381,MA0084.1;1.72172,MA0087.1;1.17185,MA0088.1;0.536981,MA0089.1;0,MA0090.1;0.640115,MA0091.1;0.715356,MA0092.1;0.673508,MA0093.1;1.32557,MA0095.1;0,MA0098.1;0,MA0100.1;0.83965,MA0101.1;0.539569,MA0103.1;0.521546,MA0105.1;0.656404,MA0106.1;0.869173,MA0107.1;2.00595,MA0108.2;1.03412,MA0109.1;0,MA0111.1;0.655276,MA0113.1;0.886811,MA0114.1;0.447443,MA0115.1;1.45393,MA0116.1;0.457606,MA0117.1;1.24497,MA0119.1;0.586221,MA0122.1;1.27173,MA0124.1;1.41151,MA0125.1;1.32534,MA0130.1;0,MA0131.1;0.94608,MA0132.1;0,MA0133.1;0,MA0135.1;1.23748,MA0136.1;0.832277,MA0139.1;0.912459,MA0140.1;0.779643,MA0141.1;1.46638,MA0142.1;1.00381,MA0143.1;0.887001,MA0144.1;0.430413,MA0145.1;1.08195,MA0146.1;3.58384,MA0147.1;2.03364,MA0148.1;0.739888,MA0149.1;0.769072,MA0062.2;0.931615,MA0035.2;0.778873,MA0039.2;0.257871,MA0138.2;0.928035,MA0002.2;0.379056,MA0137.2;0.558189,MA0104.2;1.79838,MA0047.2;0.856092,MA0112.2;0.551048,MA0065.2;0.577908,MA0150.1;0.633493,MA0151.1;0,MA0152.1;0.78681,MA0153.1;1.30799,MA0154.1;0.649108,MA0155.1;0.180766,MA0156.1;0.560797,MA0157.1;0.97481,MA0158.1;0,MA0159.1;0.462502,MA0160.1;0.756582,MA0161.1;0,MA0162.1;0.640035,MA0163.1;0.0725493,MA0164.1;0.90014,MA0080.2;0.535868,MA0018.2;0.870662,MA0099.2;0.7872,MA0079.2;0.0626799,MA0102.2;1.75932,MA0258.1;0.418966,MA0259.1;1.1888,MA0442.1;0 | |||
}} | }} | ||
Revision as of 20:27, 22 January 2013
Full id: C2150_left_heart_tongue_diaphragm_skeletal_throat_iPS
Phase1 CAGE Peaks
| Hg19::chr11:63742116..63742139,+ | p1@ENST00000535431 |
| Hg19::chr16:2009598..2009610,+ | p2@NDUFB10 |
| Hg19::chr16:58768148..58768173,- | p2@GOT2 |
| Hg19::chr17:46970196..46970219,+ | p2@ATP5G1 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| p.value | FDR | nGenes | nPathway | Name |
|---|---|---|---|---|
| 6.34702985400389e-05 | 0.00669611649597411 | 2 | 132 | Oxidative phosphorylation (KEGG):00190 |
| 6.31961929821581e-05 | 0.00669611649597411 | 3 | 1138 | Metabolic pathways (KEGG):01100 |
| 0.000101670189141599 | 0.00919388996094747 | 2 | 167 | Alzheimer's disease (KEGG):05010 |
| 6.15571812123322e-05 | 0.00669611649597411 | 2 | 130 | Parkinson's disease (KEGG):05012 |
| 0.000122103636745775 | 0.00966145025750944 | 2 | 183 | Huntington's disease (KEGG):05016 |
| 4.32324164114602e-05 | 0.00669611649597411 | 2 | 109 | Electron Transport Chain (Wikipathways):WP111 |
| 1.30154892898757e-05 | 0.00669611649597411 | 2 | 60 | Oxidative phosphorylation (Wikipathways):WP623 |
| 2.38132621447758e-05 | 0.00669611649597411 | 2 | 81 | Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. (Reactome):REACT_6305 |
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0005743 | mitochondrial inner membrane | 6.82918866373343e-05 |
| GO:0019866 | organelle inner membrane | 6.82918866373343e-05 |
| GO:0031966 | mitochondrial membrane | 7.60730372543529e-05 |
| GO:0005740 | mitochondrial envelope | 7.60730372543529e-05 |
| GO:0044429 | mitochondrial part | 0.000131288369820187 |
| GO:0031967 | organelle envelope | 0.000131288369820187 |
| GO:0031975 | envelope | 0.000131288369820187 |
| GO:0005739 | mitochondrion | 0.00047366066166673 |
| GO:0044455 | mitochondrial membrane part | 0.00062342863819871 |
| GO:0006119 | oxidative phosphorylation | 0.000970045477986535 |
| GO:0031090 | organelle membrane | 0.00118959530382525 |
| GO:0004069 | aspartate transaminase activity | 0.00219291790159512 |
| GO:0006533 | aspartate catabolic process | 0.003759066507952 |
| GO:0006531 | aspartate metabolic process | 0.003759066507952 |
| GO:0009068 | aspartate family amino acid catabolic process | 0.00613926641404257 |
| GO:0005753 | mitochondrial proton-transporting ATP synthase complex | 0.00986522591619858 |
| GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | 0.0124210485008482 |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | 0.0124210485008482 |
| GO:0044446 | intracellular organelle part | 0.0133772210105688 |
| GO:0044422 | organelle part | 0.0133772210105688 |
| GO:0045259 | proton-transporting ATP synthase complex | 0.014401696749241 |
| GO:0006091 | generation of precursor metabolites and energy | 0.0151895890322062 |
| GO:0044444 | cytoplasmic part | 0.0153386794966899 |
| GO:0009066 | aspartate family amino acid metabolic process | 0.0153386794966899 |
| GO:0030964 | NADH dehydrogenase complex (quinone) | 0.0209292682243403 |
| GO:0045271 | respiratory chain complex I | 0.0209292682243403 |
| GO:0005747 | mitochondrial respiratory chain complex I | 0.0209292682243403 |
| GO:0008483 | transaminase activity | 0.0215879191646015 |
| GO:0006120 | mitochondrial electron transport, NADH to ubiquinone | 0.0236841567176141 |
| GO:0016310 | phosphorylation | 0.0236841567176141 |
| GO:0016769 | transferase activity, transferring nitrogenous groups | 0.0236841567176141 |
| GO:0050136 | NADH dehydrogenase (quinone) activity | 0.0236841567176141 |
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity | 0.0236841567176141 |
| GO:0003954 | NADH dehydrogenase activity | 0.0236841567176141 |
| GO:0046933 | hydrogen ion transporting ATP synthase activity, rotational mechanism | 0.0236841567176141 |
| GO:0046961 | hydrogen ion transporting ATPase activity, rotational mechanism | 0.0236841567176141 |
| GO:0042775 | organelle ATP synthesis coupled electron transport | 0.0236841567176141 |
| GO:0016655 | oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor | 0.0236841567176141 |
| GO:0005746 | mitochondrial respiratory chain | 0.0236841567176141 |
| GO:0042773 | ATP synthesis coupled electron transport | 0.0236841567176141 |
| GO:0015985 | energy coupled proton transport, down electrochemical gradient | 0.0236841567176141 |
| GO:0015986 | ATP synthesis coupled proton transport | 0.0236841567176141 |
| GO:0006793 | phosphorus metabolic process | 0.0236841567176141 |
| GO:0006796 | phosphate metabolic process | 0.0236841567176141 |
| GO:0006754 | ATP biosynthetic process | 0.0236841567176141 |
| GO:0006753 | nucleoside phosphate metabolic process | 0.0236841567176141 |
| GO:0009063 | amino acid catabolic process | 0.0242944952463599 |
| GO:0046034 | ATP metabolic process | 0.024698602515066 |
| GO:0009310 | amine catabolic process | 0.024698602515066 |
| GO:0019829 | cation-transporting ATPase activity | 0.024698602515066 |
| GO:0044270 | nitrogen compound catabolic process | 0.024698602515066 |
| GO:0016469 | proton-transporting two-sector ATPase complex | 0.026727949683397 |
| GO:0016651 | oxidoreductase activity, acting on NADH or NADPH | 0.026727949683397 |
| GO:0030170 | pyridoxal phosphate binding | 0.0272202797454679 |
| GO:0009145 | purine nucleoside triphosphate biosynthetic process | 0.0272202797454679 |
| GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | 0.0272202797454679 |
| GO:0009201 | ribonucleoside triphosphate biosynthetic process | 0.0272202797454679 |
| GO:0005737 | cytoplasm | 0.0272202797454679 |
| GO:0009142 | nucleoside triphosphate biosynthetic process | 0.0272202797454679 |
| GO:0009205 | purine ribonucleoside triphosphate metabolic process | 0.0272202797454679 |
| GO:0009144 | purine nucleoside triphosphate metabolic process | 0.0272202797454679 |
| GO:0009199 | ribonucleoside triphosphate metabolic process | 0.0272202797454679 |
| GO:0015992 | proton transport | 0.0272202797454679 |
| GO:0006818 | hydrogen transport | 0.0272202797454679 |
| GO:0006869 | lipid transport | 0.0272202797454679 |
| GO:0006752 | group transfer coenzyme metabolic process | 0.027401158131206 |
| GO:0009141 | nucleoside triphosphate metabolic process | 0.0283221990602095 |
| GO:0009152 | purine ribonucleotide biosynthetic process | 0.0283221990602095 |
| GO:0009150 | purine ribonucleotide metabolic process | 0.0293294340550967 |
| GO:0009260 | ribonucleotide biosynthetic process | 0.0293294340550967 |
| GO:0006164 | purine nucleotide biosynthetic process | 0.0293294340550967 |
| GO:0006163 | purine nucleotide metabolic process | 0.029991643053738 |
| GO:0009259 | ribonucleotide metabolic process | 0.029991643053738 |
| GO:0009058 | biosynthetic process | 0.029991643053738 |
| GO:0031980 | mitochondrial lumen | 0.0315133858777004 |
| GO:0005759 | mitochondrial matrix | 0.0315133858777004 |
| GO:0009108 | coenzyme biosynthetic process | 0.0330769873577077 |
| GO:0043231 | intracellular membrane-bound organelle | 0.0330769873577077 |
| GO:0043227 | membrane-bound organelle | 0.0330769873577077 |
| GO:0015078 | hydrogen ion transmembrane transporter activity | 0.0331900151934134 |
| GO:0042625 | ATPase activity, coupled to transmembrane movement of ions | 0.0334222348775195 |
| GO:0015077 | monovalent inorganic cation transmembrane transporter activity | 0.0346519919713304 |
| GO:0051188 | cofactor biosynthetic process | 0.0346519919713304 |
| GO:0043234 | protein complex | 0.0361460514474408 |
| GO:0019842 | vitamin binding | 0.0376539411407996 |
| GO:0009055 | electron carrier activity | 0.0382786005924434 |
| GO:0009165 | nucleotide biosynthetic process | 0.0382786005924434 |
| GO:0016020 | membrane | 0.0398697691353846 |
| GO:0022890 | inorganic cation transmembrane transporter activity | 0.0398697691353846 |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | 0.0398697691353846 |
| GO:0043492 | ATPase activity, coupled to movement of substances | 0.0398697691353846 |
| GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.0402804128244258 |
| GO:0006732 | coenzyme metabolic process | 0.0404037484717721 |
| GO:0015399 | primary active transmembrane transporter activity | 0.0415947791500103 |
| GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.0415947791500103 |
| GO:0009117 | nucleotide metabolic process | 0.0460605578777584 |
| GO:0051186 | cofactor metabolic process | 0.0460605578777584 |
| GO:0043229 | intracellular organelle | 0.0477710713261117 |
| GO:0043226 | organelle | 0.0477710713261117 |
| GO:0055086 | nucleobase, nucleoside and nucleotide metabolic process | 0.0477710713261117 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 5.66e-17 | 253 |
| embryonic cell | 8.94e-11 | 250 |
| Ontology term | p-value | n |
|---|---|---|
| multi-tissue structure | 1.90e-20 | 342 |
| anatomical cluster | 1.36e-17 | 373 |
| cell layer | 5.95e-16 | 309 |
| epithelium | 1.48e-15 | 306 |
| anatomical conduit | 9.27e-14 | 240 |
| tube | 2.48e-13 | 192 |
| compound organ | 8.49e-11 | 68 |
| organism subdivision | 1.41e-10 | 264 |
| mesenchyme | 1.55e-10 | 160 |
| entire embryonic mesenchyme | 1.55e-10 | 160 |
| trunk | 1.72e-10 | 199 |
| epithelial tube | 2.67e-10 | 117 |
| organ part | 8.87e-09 | 218 |
| trunk mesenchyme | 3.53e-08 | 122 |
| subdivision of trunk | 1.21e-07 | 112 |
| organ system subdivision | 1.37e-07 | 223 |
| unilaminar epithelium | 1.85e-07 | 148 |
| primordium | 4.80e-07 | 160 |
| embryo | 5.39e-07 | 592 |
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 6.93e-12 | 106 |
| cell type cancer | 8.40e-11 | 143 |
| disease of cellular proliferation | 1.43e-10 | 239 |
| cancer | 2.00e-10 | 235 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 1.45381 |
| MA0004.1 | 0.71247 |
| MA0006.1 | 0.532262 |
| MA0007.1 | 0.6918 |
| MA0009.1 | 1.20602 |
| MA0014.1 | 1.86845 |
| MA0017.1 | 0.577281 |
| MA0019.1 | 0.873355 |
| MA0024.1 | 1.09684 |
| MA0025.1 | 1.34373 |
| MA0027.1 | 2.83281 |
| MA0028.1 | 1.35734 |
| MA0029.1 | 1.11704 |
| MA0030.1 | 1.10506 |
| MA0031.1 | 1.03735 |
| MA0038.1 | 0.824639 |
| MA0040.1 | 1.12314 |
| MA0041.1 | 0.732902 |
| MA0042.1 | 0.697662 |
| MA0043.1 | 1.20635 |
| MA0046.1 | 1.19471 |
| MA0048.1 | 1.30988 |
| MA0050.1 | 0.69864 |
| MA0051.1 | 0.820063 |
| MA0052.1 | 1.12718 |
| MA0055.1 | 1.28887 |
| MA0056.1 | 0 |
| MA0057.1 | 0.248209 |
| MA0058.1 | 1.47358 |
| MA0059.1 | 0.604454 |
| MA0060.1 | 1.80156 |
| MA0061.1 | 1.68681 |
| MA0063.1 | 0 |
| MA0066.1 | 0.825101 |
| MA0067.1 | 1.53181 |
| MA0068.1 | 0.313194 |
| MA0069.1 | 1.19071 |
| MA0070.1 | 1.17908 |
| MA0071.1 | 0.782546 |
| MA0072.1 | 1.1744 |
| MA0073.1 | 0.0343867 |
| MA0074.1 | 0.819248 |
| MA0076.1 | 0.623864 |
| MA0077.1 | 1.16637 |
| MA0078.1 | 0.926725 |
| MA0081.1 | 0.604638 |
| MA0083.1 | 1.21381 |
| MA0084.1 | 1.72172 |
| MA0087.1 | 1.17185 |
| MA0088.1 | 0.536981 |
| MA0089.1 | 0 |
| MA0090.1 | 0.640115 |
| MA0091.1 | 0.715356 |
| MA0092.1 | 0.673508 |
| MA0093.1 | 1.32557 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.83965 |
| MA0101.1 | 0.539569 |
| MA0103.1 | 0.521546 |
| MA0105.1 | 0.656404 |
| MA0106.1 | 0.869173 |
| MA0107.1 | 2.00595 |
| MA0108.2 | 1.03412 |
| MA0109.1 | 0 |
| MA0111.1 | 0.655276 |
| MA0113.1 | 0.886811 |
| MA0114.1 | 0.447443 |
| MA0115.1 | 1.45393 |
| MA0116.1 | 0.457606 |
| MA0117.1 | 1.24497 |
| MA0119.1 | 0.586221 |
| MA0122.1 | 1.27173 |
| MA0124.1 | 1.41151 |
| MA0125.1 | 1.32534 |
| MA0130.1 | 0 |
| MA0131.1 | 0.94608 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.23748 |
| MA0136.1 | 0.832277 |
| MA0139.1 | 0.912459 |
| MA0140.1 | 0.779643 |
| MA0141.1 | 1.46638 |
| MA0142.1 | 1.00381 |
| MA0143.1 | 0.887001 |
| MA0144.1 | 0.430413 |
| MA0145.1 | 1.08195 |
| MA0146.1 | 3.58384 |
| MA0147.1 | 2.03364 |
| MA0148.1 | 0.739888 |
| MA0149.1 | 0.769072 |
| MA0062.2 | 0.931615 |
| MA0035.2 | 0.778873 |
| MA0039.2 | 0.257871 |
| MA0138.2 | 0.928035 |
| MA0002.2 | 0.379056 |
| MA0137.2 | 0.558189 |
| MA0104.2 | 1.79838 |
| MA0047.2 | 0.856092 |
| MA0112.2 | 0.551048 |
| MA0065.2 | 0.577908 |
| MA0150.1 | 0.633493 |
| MA0151.1 | 0 |
| MA0152.1 | 0.78681 |
| MA0153.1 | 1.30799 |
| MA0154.1 | 0.649108 |
| MA0155.1 | 0.180766 |
| MA0156.1 | 0.560797 |
| MA0157.1 | 0.97481 |
| MA0158.1 | 0 |
| MA0159.1 | 0.462502 |
| MA0160.1 | 0.756582 |
| MA0161.1 | 0 |
| MA0162.1 | 0.640035 |
| MA0163.1 | 0.0725493 |
| MA0164.1 | 0.90014 |
| MA0080.2 | 0.535868 |
| MA0018.2 | 0.870662 |
| MA0099.2 | 0.7872 |
| MA0079.2 | 0.0626799 |
| MA0102.2 | 1.75932 |
| MA0258.1 | 0.418966 |
| MA0259.1 | 1.1888 |
| MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| ATF3#467 | 2 | 11.2315872630044 | 0.0111955903992222 | 0.041120318822028 |
| CCNT2#905 | 3 | 4.75215118272197 | 0.0138620699668949 | 0.0487012051425483 |
| E2F4#1874 | 4 | 12.6680603152844 | 3.88145892637771e-05 | 0.000725569516398715 |
| E2F6#1876 | 4 | 5.01715573169739 | 0.0015780219347306 | 0.00995091370856955 |
| EGR1#1958 | 4 | 4.98817909481014 | 0.00161501150007605 | 0.0101279083737506 |
| ELF1#1997 | 4 | 4.25809795880754 | 0.00304152556578124 | 0.0160561003115966 |
| ETS1#2113 | 4 | 9.72876092220234 | 0.000111595531741814 | 0.00154328995492363 |
| GABPB1#2553 | 3 | 5.30076287713663 | 0.0101267882423427 | 0.0378374226260029 |
| GTF2F1#2962 | 3 | 9.55474565756824 | 0.00182036231930478 | 0.0108961955677368 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.0185580422210487 |
| IRF1#3659 | 3 | 5.72787281517293 | 0.00809711479033333 | 0.0319863292074901 |
| IRF3#3661 | 2 | 23.4909761057448 | 0.00264110142537554 | 0.0145913029922131 |
| IRF4#3662 | 2 | 10.9572563433721 | 0.0117453018068803 | 0.0428156221783168 |
| JUND#3727 | 3 | 5.24599795640327 | 0.0104343275174842 | 0.038666952829668 |
| MAX#4149 | 3 | 4.83941663175534 | 0.0131573713783684 | 0.0465937443844233 |
| MXI1#4601 | 4 | 9.9615716287593 | 0.000101522475495045 | 0.0014213010480197 |
| MYC#4609 | 4 | 5.2222818716094 | 0.00134430939527274 | 0.0088568211539799 |
| NFKB1#4790 | 4 | 5.48806342419384 | 0.00110219956630198 | 0.00766497672826024 |
| PAX5#5079 | 3 | 5.00217414838337 | 0.0119653317478641 | 0.0434750654889777 |
| POU2F2#5452 | 4 | 9.10612405774252 | 0.00014539566517493 | 0.00188095848819577 |
| RAD21#5885 | 3 | 7.76627542159225 | 0.003341119385872 | 0.0172624501603387 |
| RFX5#5993 | 3 | 9.03593312039632 | 0.00214456119132407 | 0.0123805110972691 |
| SIN3A#25942 | 4 | 5.40888472681514 | 0.00116817238488516 | 0.00794495674036343 |
| SP2#6668 | 3 | 19.6151478703835 | 0.000217100426924534 | 0.00248479468356946 |
| SPI1#6688 | 3 | 6.15324263139204 | 0.00658038711305903 | 0.0280899636107567 |
| STAT1#6772 | 2 | 10.3532937485996 | 0.0131077747617126 | 0.0464843086023261 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0321294099971372 |
| TAF7#6879 | 3 | 8.57480205369294 | 0.0025005543351524 | 0.0140270380389398 |
| TBP#6908 | 4 | 3.70677068709639 | 0.00529637781478435 | 0.0243516796213191 |
| USF1#7391 | 3 | 4.77112445790597 | 0.0137046588718802 | 0.0482748446126443 |
| YY1#7528 | 4 | 4.91117074985386 | 0.0017187183805544 | 0.0106623836618189 |
| ZNF143#7702 | 3 | 10.1256574141709 | 0.00153486161068818 | 0.0097606656371347 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
