FFCP PHASE1:Hg19::chr12:59314028..59314071,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=121227|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30991|TSSclassifier=S|UniProt=|association_with_transcript=-91bp_to_ENST00000548968_5end|coexpression_cluster_id=C181|description=CAGE_peak_3_at_LRIG3_5end|id=chr12:59314028..59314071,-|ontology_enrichment_celltype=CL:0000057!5.94e-12!75;CL:0000055!2.07e-08!180;CL:0002620!3.74e-08!23|ontology_enrichment_celltype_v019=CL:0002620;1.37e-09;23|ontology_enrichment_celltype_v019_2=CL:0000057,5.19e-11,76;CL:0002620,4.11e-09,23|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!3.28e-18!95;UBERON:0000475!1.36e-15!365;UBERON:0000468!2.05e-13!659;UBERON:0000481!5.75e-13!347;UBERON:0004119!2.76e-12!169;UBERON:0000925!2.76e-12!169;UBERON:0006595!2.76e-12!169;UBERON:0001007!1.27e-11!155;UBERON:0001555!1.27e-11!155;UBERON:0007026!1.27e-11!155;UBERON:0000161!2.86e-10!35;UBERON:0000467!2.91e-10!625;UBERON:0000165!3.70e-10!28;UBERON:0000930!3.70e-10!28;UBERON:0000480!4.91e-10!626;UBERON:0003104!3.28e-09!238;UBERON:0009142!3.28e-09!238;UBERON:0000166!1.09e-08!21;UBERON:0000062!1.16e-08!511;UBERON:0001444!1.26e-08!48;UBERON:0002097!2.76e-08!40;UBERON:0002100!1.58e-07!216;UBERON:0004921!2.37e-07!129;UBERON:0004185!2.37e-07!129;UBERON:0002199!4.64e-07!45;UBERON:0002416!4.64e-07!45|ontology_enrichment_uberon_v019=UBERON:0000165;1.30e-10;28!UBERON:0000161;2.18e-08;19!UBERON:0000166;2.18e-08;19!UBERON:0002097;1.38e-07;41!UBERON:0001555;2.33e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.40e-20,99;UBERON:0000165,4.96e-11,29;UBERON:0000930,4.96e-11,29;UBERON:0000161,5.71e-11,36;UBERON:0002097,1.01e-09,41;UBERON:0000166,1.11e-09,22;UBERON:0000033,3.43e-09,56;UBERON:0000153,1.06e-08,62;UBERON:0007811,1.06e-08,62;UBERON:0001444,2.32e-08,49;UBERON:0004119,1.38e-07,160;UBERON:0000925,1.38e-07,160;UBERON:0006595,1.38e-07,160;UBERON:0002199,1.56e-07,46;UBERON:0002416,1.56e-07,46;UBERON:0001007,6.73e-07,145;UBERON:0001555,6.73e-07,145;UBERON:0007026,6.73e-07,145|phase1_expression=2.72517568905835,1.71280419112787,2.96004248601539,1.0007329835313,1.78784437770915,0,0,0.631719873426831,0.522371256399677,0.491467873003018,0,0.218441372130172,0.791300934685361,1.8564952944007,1.32558950291166,0.672325146451775,1.80808358407193,0.730310090387373,1.46379839637152,1.23121058076788,1.42800483870977,1.25381888591235,0.286235987131057,0.958120975510189,0.87879847716362,0.0764134057479513,0,0.0787107813136792,0,0,0,1.83884244895785,0.90361775633475,2.58827807116751,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,1.44575660953827,2.50668955317945,1.30361867064741,0,1.94653948121054,1.13441780596881,1.10864698731282,3.51339142772504,1.0478326039817,1.82147644146271,1.11235332835329,0,0,0,0,0,0,0.993812036833525,0,1.04142150482278,1.13061588384802,0,0.825354125820202,1.46296476575767,0.516833518338658,1.77883131343355,2.00832367658802,1.20848795132744,0,2.4406205754817,0.367663080345869,0,1.69669483739752,0.44905874525234,1.12611480483322,0,0,1.28241220751285,0,0,2.18047026071267,1.49091585508596,0.759783069987479,3.31022952033047,4.01571269048339,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.622422070799533,2.15537075311501,0.490385709340376,8.1733010928263,8.06646294271999,0.234321431833797,2.49728061464256,1.71141546463335,1.04614076386261,1.40921398372518,1.13311061057692,1.12360645361799,2.44985005505872,1.10550885580591,2.37649296704261,3.56400857184616,2.96720315134268,0,0.718618141816238,1.68336113954066,0.875829639103749,1.38532057742091,1.31693286264251,3.67785354958824,1.65261864797256,0.340296549480063,1.25572744982203,3.20336083227851,5.08636562782948,3.60109315301283,2.37020817248409,4.12224864073007,2.04728541964749,4.05063197379039,0.584622030967192,6.56327813034698,4.60249493211497,4.20279747728911,3.90510551768276,0.806016785821122,1.52604533079439,0.966304265816484,2.45471508531751,1.72082757233402,0.121973706129595,0.397589304964456,0.232387885739037,0.725627385107593,0,0.36497735907583,10.9514672630871,1.92972281457866,1.38134921352481,4.17931135228781,4.33127689001751,0.591534000199219,0.842923450390509,1.20505514941741,0.220587945464788,0.217879444092406,0.237270619111097,0.539325232640658,0.392442930250692,1.15424147083917,0,0,0.4115740113314,1.47008711385542,2.53510069643662,0,0.590789906681404,0,0.737930631258681,0,1.31700342490351,0,1.20634766893957,2.31471112896324,1.3032332212413,2.07986957055916,0,0,1.6437217193015,1.58803092537181,0.925971025153221,0.951270761172991,0,0,0,0,0,2.81201501960331,4.53551746136921,2.26840155587818,4.92571874865666,3.19697332365358,3.06706143332169,0,0,0,0.144119953416961,0.25248486685276,0.380987365753014,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=121227 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30991 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-91bp_to_ENST00000548968_5end | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_3_at_LRIG3_5end | |||
|id=chr12:59314028..59314071,- | |||
|ontology_enrichment_celltype=CL:0000057!5.94e-12!75;CL:0000055!2.07e-08!180;CL:0002620!3.74e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.37e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.19e-11,76;CL:0002620,4.11e-09,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!3.28e-18!95;UBERON:0000475!1.36e-15!365;UBERON:0000468!2.05e-13!659;UBERON:0000481!5.75e-13!347;UBERON:0004119!2.76e-12!169;UBERON:0000925!2.76e-12!169;UBERON:0006595!2.76e-12!169;UBERON:0001007!1.27e-11!155;UBERON:0001555!1.27e-11!155;UBERON:0007026!1.27e-11!155;UBERON:0000161!2.86e-10!35;UBERON:0000467!2.91e-10!625;UBERON:0000165!3.70e-10!28;UBERON:0000930!3.70e-10!28;UBERON:0000480!4.91e-10!626;UBERON:0003104!3.28e-09!238;UBERON:0009142!3.28e-09!238;UBERON:0000166!1.09e-08!21;UBERON:0000062!1.16e-08!511;UBERON:0001444!1.26e-08!48;UBERON:0002097!2.76e-08!40;UBERON:0002100!1.58e-07!216;UBERON:0004921!2.37e-07!129;UBERON:0004185!2.37e-07!129;UBERON:0002199!4.64e-07!45;UBERON:0002416!4.64e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;1.30e-10;28!UBERON:0000161;2.18e-08;19!UBERON:0000166;2.18e-08;19!UBERON:0002097;1.38e-07;41!UBERON:0001555;2.33e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.40e-20,99;UBERON:0000165,4.96e-11,29;UBERON:0000930,4.96e-11,29;UBERON:0000161,5.71e-11,36;UBERON:0002097,1.01e-09,41;UBERON:0000166,1.11e-09,22;UBERON:0000033,3.43e-09,56;UBERON:0000153,1.06e-08,62;UBERON:0007811,1.06e-08,62;UBERON:0001444,2.32e-08,49;UBERON:0004119,1.38e-07,160;UBERON:0000925,1.38e-07,160;UBERON:0006595,1.38e-07,160;UBERON:0002199,1.56e-07,46;UBERON:0002416,1.56e-07,46;UBERON:0001007,6.73e-07,145;UBERON:0001555,6.73e-07,145;UBERON:0007026,6.73e-07,145 | |||
|phase1_expression=2.72517568905835,1.71280419112787,2.96004248601539,1.0007329835313,1.78784437770915,0,0,0.631719873426831,0.522371256399677,0.491467873003018,0,0.218441372130172,0.791300934685361,1.8564952944007,1.32558950291166,0.672325146451775,1.80808358407193,0.730310090387373,1.46379839637152,1.23121058076788,1.42800483870977,1.25381888591235,0.286235987131057,0.958120975510189,0.87879847716362,0.0764134057479513,0,0.0787107813136792,0,0,0,1.83884244895785,0.90361775633475,2.58827807116751,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,1.44575660953827,2.50668955317945,1.30361867064741,0,1.94653948121054,1.13441780596881,1.10864698731282,3.51339142772504,1.0478326039817,1.82147644146271,1.11235332835329,0,0,0,0,0,0,0.993812036833525,0,1.04142150482278,1.13061588384802,0,0.825354125820202,1.46296476575767,0.516833518338658,1.77883131343355,2.00832367658802,1.20848795132744,0,2.4406205754817,0.367663080345869,0,1.69669483739752,0.44905874525234,1.12611480483322,0,0,1.28241220751285,0,0,2.18047026071267,1.49091585508596,0.759783069987479,3.31022952033047,4.01571269048339,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.622422070799533,2.15537075311501,0.490385709340376,8.1733010928263,8.06646294271999,0.234321431833797,2.49728061464256,1.71141546463335,1.04614076386261,1.40921398372518,1.13311061057692,1.12360645361799,2.44985005505872,1.10550885580591,2.37649296704261,3.56400857184616,2.96720315134268,0,0.718618141816238,1.68336113954066,0.875829639103749,1.38532057742091,1.31693286264251,3.67785354958824,1.65261864797256,0.340296549480063,1.25572744982203,3.20336083227851,5.08636562782948,3.60109315301283,2.37020817248409,4.12224864073007,2.04728541964749,4.05063197379039,0.584622030967192,6.56327813034698,4.60249493211497,4.20279747728911,3.90510551768276,0.806016785821122,1.52604533079439,0.966304265816484,2.45471508531751,1.72082757233402,0.121973706129595,0.397589304964456,0.232387885739037,0.725627385107593,0,0.36497735907583,10.9514672630871,1.92972281457866,1.38134921352481,4.17931135228781,4.33127689001751,0.591534000199219,0.842923450390509,1.20505514941741,0.220587945464788,0.217879444092406,0.237270619111097,0.539325232640658,0.392442930250692,1.15424147083917,0,0,0.4115740113314,1.47008711385542,2.53510069643662,0,0.590789906681404,0,0.737930631258681,0,1.31700342490351,0,1.20634766893957,2.31471112896324,1.3032332212413,2.07986957055916,0,0,1.6437217193015,1.58803092537181,0.925971025153221,0.951270761172991,0,0,0,0,0,2.81201501960331,4.53551746136921,2.26840155587818,4.92571874865666,3.19697332365358,3.06706143332169,0,0,0,0.144119953416961,0.25248486685276,0.380987365753014,0,0,3.4214489204541,0.514137463516618,0,0.285826432630578,2.24262168690721,5.23152082599936,1.1734125731352,1.29271715757778,3.57656445851882,0,2.6593811658487,1.04007436911366,0.257207374262142,1.41849132023278,1.0656887160644,1.00084595560703,0,0.823240336780769,0.325736184293735,0.355391948742546,0.791951872933429,0.602878754119172,0.871533458600294,0.99972991182057,0,0,0,1.91699884393266,9.18895486672911,0,1.15825045334063,1.64381058040307,1.79060963239896,0,0,0,0,1.52456774533478,1.30139853857622,0.773288812777695,0.167516265334349,0,0,0,0,2.82190430954022,1.50051156317903,4.06897535549603,1.87173775377726,2.14114786556594,1.10391690523754,2.22568688486155,1.80567659836631,0,1.03473071292505,0.664225598535437,0.737476674166813,2.25897397617015,7.04884166865866,7.20601190002797,0,0,0,0,1.66435439510497,0,1.73675465473144,5.21770709179412,3.36792113319688,1.02511319404561,1.02341449813341,0.64341568457443,0,0.462629081407967,0.710246901252508,1.14978018419333,2.07701771673448,1.04589340613963,1.0877350463246,1.80455823272956,2.85451065701279,0.803701137152247,1.63882051206045,1.70461739447251,0.902399225814824,0.924184045252977,3.92174884588428,0,1.47772280450026,0,0.340187410553031,1.51141141271498,0,0.270946437543853,1.00337954770971,0.764628819135115,0.831076008928724,0.447749509444357,0,0,0.256450125116389,0.328014645699706,0.976135183992909,2.16386124460217,1.09883357782012,1.15513299888823,1.72279661398852,0.650060246036521,0,0.580024309752732,0.462145851343933,0.614014698904518,0.551346289938122,1.07420244868274,1.30515024522806,1.19317278382541,0.979352392114111,2.64455864577565,2.69066094311149,6.12541019974004,4.8555734810664,0,2.51849877464512,0,0,0.532306030317022,0.869932992075073,0.55597265731176,1.28812398067792,9.67611760335135,4.74569137078089,2.09693213316207,1.02359116524534,0.855877976067841,1.59101623962968,0.78494864019923,3.05783177891635,2.47083326762449,1.17812402345686,0.202182481573316,0,0.421258456238981,1.46290121726877,0.243713489631284,0,1.50149902548784,2.82810863907426,1.13008116620243,1.10273068709225,0,0,0,3.27947376023316,0.202910376962704,0.3098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| |||
|short_description=p3@LRIG3 | |||
}} |
Revision as of 23:46, 10 September 2013
Short description: | p3@LRIG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LRIG3_5end |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | -91bp_to_ENST00000548968_5end |
EntrezGene: | LRIG3 |
HGNC: | 30991 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.19e-11 | 76 |
skin fibroblast | 4.11e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.40e-20 | 99 |
mouth | 4.96e-11 | 29 |
stomodeum | 4.96e-11 | 29 |
orifice | 5.71e-11 | 36 |
skin of body | 1.01e-09 | 41 |
oral opening | 1.11e-09 | 22 |
head | 3.43e-09 | 56 |
anterior region of body | 1.06e-08 | 62 |
craniocervical region | 1.06e-08 | 62 |
subdivision of head | 2.32e-08 | 49 |
endoderm-derived structure | 1.38e-07 | 160 |
endoderm | 1.38e-07 | 160 |
presumptive endoderm | 1.38e-07 | 160 |
integument | 1.56e-07 | 46 |
integumental system | 1.56e-07 | 46 |
digestive system | 6.73e-07 | 145 |
digestive tract | 6.73e-07 | 145 |
primitive gut | 6.73e-07 | 145 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.