FFCP PHASE1:Hg19::chr16:28996522..28996529,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27040|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18874|TSSclassifier=S|UniProt=O43561|association_with_transcript=107bp_to_ENST00000360872_5end|description=CAGE_peak_9_at_LAT_5end|id=chr16:28996522..28996529,+|ontology_enrichment_celltype=CL:0000084!1.42e-32!25;CL:0000827!1.42e-32!25;CL:0000988!6.09e-21!182;CL:0000791!1.76e-20!18;CL:0000789!1.76e-20!18;CL:0002420!1.76e-20!18;CL:0002419!1.76e-20!18;CL:0000790!1.76e-20!18;CL:0000037!7.52e-20!172;CL:0000566!7.52e-20!172;CL:0002032!3.81e-19!165;CL:0000837!3.81e-19!165;CL:0000838!3.01e-18!52;CL:0000542!9.21e-18!53;CL:0000051!9.21e-18!53;CL:0000738!7.33e-17!140;CL:0002031!3.35e-16!124;CL:0002087!9.73e-14!119;CL:0000625!1.57e-12!11;CL:0002274!6.17e-12!5;CL:0000457!6.17e-12!5;CL:0002191!6.17e-12!5;CL:0000097!6.17e-12!5;CL:0000831!6.17e-12!5;CL:0002028!6.17e-12!5;CL:0000080!2.45e-08!6;CL:0000624!2.69e-08!6|ontology_enrichment_celltype_v019=CL:0000097;1.40e-31;5!CL:0000163;1.77e-17;9!CL:0000084;4.22e-11;25!CL:1001319;3.30e-07;1!CL:1000600;3.30e-07;1!CL:0000895;3.30e-07;1|ontology_enrichment_celltype_v019_2=CL:0000097,1.24e-31,5;CL:0002028,1.24e-31,5;CL:0000163,1.65e-17,9;CL:0000084,4.50e-11,25;CL:0000827,4.50e-11,25;CL:0002032,1.67e-07,161;CL:0000837,1.67e-07,161;CL:0000810,3.62e-07,1;CL:0000895,3.62e-07,1;CL:0002436,3.62e-07,1;CL:0002427,3.62e-07,1;CL:0002428,3.62e-07,1;CL:0002429,3.62e-07,1;CL:0002433,3.62e-07,1;CL:0002431,3.62e-07,1;CL:0002432,3.62e-07,1;CL:1001319,4.09e-07,1;CL:1000600,4.09e-07,1;CL:0000037,4.71e-07,168|ontology_enrichment_development_v019=CL:0002427;3.30e-07;1|ontology_enrichment_disease=DOID:1240!3.37e-08!39;DOID:2531!2.59e-07!51;DOID:0060083!2.59e-07!51|ontology_enrichment_disease_v019=DOID:0060060;6.59e-08;1!DOID:0060061;6.59e-08;1!DOID:8691;6.59e-08;1|ontology_enrichment_disease_v019_2=DOID:1240,5.75e-09,39;DOID:2531,2.17e-08,51;DOID:0060083,2.17e-08,51;DOID:0060060,6.59e-08,1;DOID:0060061,6.59e-08,1;DOID:8691,6.59e-08,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0001264;5.71e-10;10!UBERON:0002075;3.04e-08;18!UBERON:0004645;3.30e-07;1!UBERON:0001256;3.30e-07;1!UBERON:0001259;3.30e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001264,4.79e-10,10;UBERON:0002075,2.85e-08,18;UBERON:0004645,4.09e-07,1;UBERON:0001256,4.09e-07,1;UBERON:0001259,4.09e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0.485168122375632,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0,0.545812300115692,0.449446968890169,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,1.17903228824749,0.205601498999509,0.501559486172034,0.32592226663359,0.473447805734733,0,3.11949279278486,0,0.664601683750863,0.270803863765016,1.0247305578054,1.8208308658383,1.15106533222573,1.10540007114339,1.44901542867526,0.296573126324121,0.267540828089713,1.04535523804977,0.679856056185397,1.14966148080576,0.34362744548263,0,0,0.651083453856419,0.950452044448374,0.150575119077773,0.127986611154418,0,0.236777252044017,0.821127996921047,0.201606743224732,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0.702012795417713,0.445893486866185,0,0,0,0,0,0,6.89728533054321,3.87413109658195,5.39053100406007,4.4677185559258,4.54472760334968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.862510299438069,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0.0711418433484141,1.27541018183058,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,5.56812347790485,0,11.9000498529433,0.99921590399346,1.4098700508785,0,0,0,2.34031106982705,0,0,0,0,0,0,0,0.16480387422676,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0.498635045700469,0,0,0,0,0.635746315921515,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0.494255755786011,0.730953646538188,0,0,0,0,0,0,0,0,0,0,0,0,3.98792323624311,6.61983911750998,1.56966459203613,1.19472429772959,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.411125773940253,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,2.60930324687408,0,2.31037150325144,2.30126261887133,0,0.288950589901519,0,0,0,0,13.407255068245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27040 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18874 | |||
|TSSclassifier=S | |||
|UniProt=O43561 | |||
|association_with_transcript=107bp_to_ENST00000360872_5end | |||
|description=CAGE_peak_9_at_LAT_5end | |||
|id=chr16:28996522..28996529,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.42e-32!25;CL:0000827!1.42e-32!25;CL:0000988!6.09e-21!182;CL:0000791!1.76e-20!18;CL:0000789!1.76e-20!18;CL:0002420!1.76e-20!18;CL:0002419!1.76e-20!18;CL:0000790!1.76e-20!18;CL:0000037!7.52e-20!172;CL:0000566!7.52e-20!172;CL:0002032!3.81e-19!165;CL:0000837!3.81e-19!165;CL:0000838!3.01e-18!52;CL:0000542!9.21e-18!53;CL:0000051!9.21e-18!53;CL:0000738!7.33e-17!140;CL:0002031!3.35e-16!124;CL:0002087!9.73e-14!119;CL:0000625!1.57e-12!11;CL:0002274!6.17e-12!5;CL:0000457!6.17e-12!5;CL:0002191!6.17e-12!5;CL:0000097!6.17e-12!5;CL:0000831!6.17e-12!5;CL:0002028!6.17e-12!5;CL:0000080!2.45e-08!6;CL:0000624!2.69e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000097;1.40e-31;5!CL:0000163;1.77e-17;9!CL:0000084;4.22e-11;25!CL:1001319;3.30e-07;1!CL:1000600;3.30e-07;1!CL:0000895;3.30e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.24e-31,5;CL:0002028,1.24e-31,5;CL:0000163,1.65e-17,9;CL:0000084,4.50e-11,25;CL:0000827,4.50e-11,25;CL:0002032,1.67e-07,161;CL:0000837,1.67e-07,161;CL:0000810,3.62e-07,1;CL:0000895,3.62e-07,1;CL:0002436,3.62e-07,1;CL:0002427,3.62e-07,1;CL:0002428,3.62e-07,1;CL:0002429,3.62e-07,1;CL:0002433,3.62e-07,1;CL:0002431,3.62e-07,1;CL:0002432,3.62e-07,1;CL:1001319,4.09e-07,1;CL:1000600,4.09e-07,1;CL:0000037,4.71e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002427;3.30e-07;1 | |||
|ontology_enrichment_disease=DOID:1240!3.37e-08!39;DOID:2531!2.59e-07!51;DOID:0060083!2.59e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:0060060;6.59e-08;1!DOID:0060061;6.59e-08;1!DOID:8691;6.59e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,5.75e-09,39;DOID:2531,2.17e-08,51;DOID:0060083,2.17e-08,51;DOID:0060060,6.59e-08,1;DOID:0060061,6.59e-08,1;DOID:8691,6.59e-08,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;5.71e-10;10!UBERON:0002075;3.04e-08;18!UBERON:0004645;3.30e-07;1!UBERON:0001256;3.30e-07;1!UBERON:0001259;3.30e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,4.79e-10,10;UBERON:0002075,2.85e-08,18;UBERON:0004645,4.09e-07,1;UBERON:0001256,4.09e-07,1;UBERON:0001259,4.09e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0.485168122375632,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0,0.545812300115692,0.449446968890169,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,1.17903228824749,0.205601498999509,0.501559486172034,0.32592226663359,0.473447805734733,0,3.11949279278486,0,0.664601683750863,0.270803863765016,1.0247305578054,1.8208308658383,1.15106533222573,1.10540007114339,1.44901542867526,0.296573126324121,0.267540828089713,1.04535523804977,0.679856056185397,1.14966148080576,0.34362744548263,0,0,0.651083453856419,0.950452044448374,0.150575119077773,0.127986611154418,0,0.236777252044017,0.821127996921047,0.201606743224732,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0.702012795417713,0.445893486866185,0,0,0,0,0,0,6.89728533054321,3.87413109658195,5.39053100406007,4.4677185559258,4.54472760334968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.862510299438069,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0.0711418433484141,1.27541018183058,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,5.56812347790485,0,11.9000498529433,0.99921590399346,1.4098700508785,0,0,0,2.34031106982705,0,0,0,0,0,0,0,0.16480387422676,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0.498635045700469,0,0,0,0,0.635746315921515,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0.494255755786011,0.730953646538188,0,0,0,0,0,0,0,0,0,0,0,0,3.98792323624311,6.61983911750998,1.56966459203613,1.19472429772959,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.411125773940253,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,2.60930324687408,0,2.31037150325144,2.30126261887133,0,0.288950589901519,0,0,0,0,13.407255068245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01281278773745,0.179287339332845,0,0,0,0,0,0,0,0,4.18671855821629,0,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0,16.998928647669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354996002191696,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258355639344024,0,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,1.05824249194267,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p9@LAT | |||
}} |
Revision as of 09:58, 11 September 2013
Short description: | p9@LAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_LAT_5end |
Coexpression cluster: | NA |
Association with transcript: | 107bp_to_ENST00000360872_5end |
EntrezGene: | LAT |
HGNC: | 18874 |
UniProt: | O43561 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.24e-31 | 5 |
basophil mast progenitor cell | 1.24e-31 | 5 |
endocrine cell | 1.65e-17 | 9 |
T cell | 4.50e-11 | 25 |
pro-T cell | 4.50e-11 | 25 |
hematopoietic oligopotent progenitor cell | 1.67e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.67e-07 | 161 |
CD4-positive, alpha-beta thymocyte | 3.62e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 3.62e-07 | 1 |
mature CD4 single-positive thymocyte | 3.62e-07 | 1 |
resting double-positive thymocyte | 3.62e-07 | 1 |
double-positive blast | 3.62e-07 | 1 |
CD69-positive double-positive thymocyte | 3.62e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 3.62e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 3.62e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 3.62e-07 | 1 |
bladder cell | 4.09e-07 | 1 |
lower urinary tract cell | 4.09e-07 | 1 |
hematopoietic stem cell | 4.71e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
pancreas | 4.79e-10 | 10 |
viscus | 2.85e-08 | 18 |
urinary bladder urothelium | 4.09e-07 | 1 |
wall of urinary bladder | 4.09e-07 | 1 |
mucosa of urinary bladder | 4.09e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
leukemia | 5.75e-09 | 39 |
hematologic cancer | 2.17e-08 | 51 |
immune system cancer | 2.17e-08 | 51 |
non-Hodgkin lymphoma | 6.59e-08 | 1 |
cutaneous T cell lymphoma | 6.59e-08 | 1 |
mycosis fungoides | 6.59e-08 | 1 |
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