FFCP PHASE1:Hg19::chr17:46970128..46970132,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=516|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=841|TSSclassifier=S|UniProt=D6RCS8|association_with_transcript=0bp_to_ENST00000513347,ENST00000514759_5end|description=CAGE_peak_3_at_ATP5G1_5end|id=chr17:46970128..46970132,+|ontology_enrichment_celltype=CL:0000183!1.71e-07!59;CL:0000187!2.83e-07!54;CL:0000680!3.89e-07!57;CL:0000056!3.89e-07!57;CL:0000355!3.89e-07!57|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000187,4.68e-08,55;CL:0000680,5.42e-08,58;CL:0000056,5.42e-08,58;CL:0000355,5.42e-08,58;CL:0000192,8.24e-07,43;CL:0000514,8.24e-07,43|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:14566!7.14e-14!239;DOID:162!4.17e-13!235;DOID:0050687!2.74e-10!143;DOID:305!2.95e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!7.73e-10!238;UBERON:0009142!7.73e-10!238;UBERON:0002100!1.35e-08!216;UBERON:0000481!9.11e-08!347;UBERON:0000486!1.48e-07!82;UBERON:0000914!1.88e-07!83;UBERON:0002329!1.88e-07!83;UBERON:0003077!1.88e-07!83;UBERON:0003059!1.88e-07!83;UBERON:0007282!1.88e-07!83;UBERON:0009618!1.88e-07!83;UBERON:0007285!1.88e-07!83;UBERON:0004290!1.91e-07!70;UBERON:0001134!2.21e-07!61;UBERON:0002036!2.21e-07!61;UBERON:0003082!2.21e-07!61;UBERON:0002385!2.85e-07!63;UBERON:0001015!2.85e-07!63;UBERON:0000383!2.85e-07!63|ontology_enrichment_uberon_v019=UBERON:0001737;7.72e-09;9!UBERON:0001557;7.72e-09;9|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.57e-10,199;UBERON:0001737,9.53e-10,9;UBERON:0003104,1.01e-08,160;UBERON:0009142,1.01e-08,160;UBERON:0002329,1.96e-08,71;UBERON:0003059,1.96e-08,71;UBERON:0007282,1.96e-08,71;UBERON:0004290,1.96e-08,71;UBERON:0009618,1.96e-08,71;UBERON:0007503,2.73e-08,78;UBERON:0003077,3.29e-08,72;UBERON:0007285,3.29e-08,72;UBERON:0007524,5.42e-08,73;UBERON:0001134,5.91e-08,62;UBERON:0002036,5.91e-08,62;UBERON:0003082,5.91e-08,62;UBERON:0005256,7.98e-08,122;UBERON:0002385,1.71e-07,64;UBERON:0001015,1.71e-07,64;UBERON:0000383,1.71e-07,64;UBERON:0000486,8.13e-07,83|phase1_expression=0.363356758541113,0.856402095563933,0,1.0007329835313,0.893922188854576,0,0,0,0.522371256399677,0.982935746006035,1.39560233594486,0.218441372130172,0,0.123766352960047,1.32558950291166,0.672325146451775,1.80808358407193,1.46062018077475,0,0.984968464614303,1.22400414746552,0.313454721478088,0.286235987131057,0.410623275218653,0.502170558379211,0.382067028739756,0.328402357799783,0.157421562627358,0,0,0,0.919421224478927,0.30120591877825,0,0.92960640696362,1.13735385989937,0.587200878669695,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449446968890169,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0.209658645508376,0.112328631146495,0,0,0.570025487482497,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,1.58030450865046,0,0,0.205601498999509,0.501559486172034,0.32592226663359,0.473447805734733,0,0.222820913770347,0.294605907474837,0,0,0,0.130059347559878,0.328875809207352,0.276350017785848,0,0,0.267540828089713,0,0.113309342697566,0.383220493601921,0,0,0.318565414324097,0,0.950452044448374,0.150575119077773,0.127986611154418,0,0,0,0.201606743224732,0,0,0,1.34140171940727,0.511450247374121,0.722878304769133,0,0.434539556882471,0,0.486634870302636,0.567208902984407,0.886917589850256,0.43917392846563,0.654895377488563,0,0,0.324547393654683,0.348259474598534,0.26591592103773,0.238490624305342,0.571994910780128,0.74291500265913,1.19257444420023,0,0.694281003215189,1.13061588384802,0,1.37559020970034,0.835979866147242,0.258416759169329,0.71153252537342,0.33472061276467,0.402829317109147,0.760272105718513,0.732186172644509,0.367663080345869,2.43042584364528,0.803697554556718,0,1.23872628531654,0,0.949265659568129,0.732806975721629,0,0,0,0,1.2663051166458,0.132409180813219,0.286836620748814,0.354668382198357,2.24271040056923,0,1.2333377420858,0,0.134710672069688,0.490385709340376,0.756787138224657,0,0.70296429550139,2.49728061464256,0,2.09228152772521,0.822041490506354,0.809364721840658,0.421352420106746,0.816616685019573,0.737005903870608,0.619954687054593,0,0.494533858557114,0,1.43723628363248,1.34668891163253,0.625592599359821,0,0.877955241761676,0.919463387397059,0.45071417671979,0.680593098960126,0,0.427114777637135,0.423863802319124,0,0.515262646192195,0,0,0,0.194874010322397,0,0.368199594569197,0.161646056818812,0,0.10075209822764,0.847802961552438,0.386521706326594,0.272746120590835,0,0.487894824518382,0.132529768321485,0.464775771478074,0.725627385107593,0,0.36497735907583,0,0,1.38134921352481,0,0.721879481669586,1.65629520055781,1.85443159085912,1.44606617930089,3.19852520923942,1.74303555273925,0.949082476444386,3.10112008768378,1.76599318612811,1.15424147083917,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0,0.882926198829301,0.245976877086227,1.02940686179115,0,2.24803506515239,0.703702806881416,0.648119116109707,0.651616610620649,0,0,0.34779121492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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=516 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=841 | |||
|TSSclassifier=S | |||
|UniProt=D6RCS8 | |||
|association_with_transcript=0bp_to_ENST00000513347,ENST00000514759_5end | |||
|description=CAGE_peak_3_at_ATP5G1_5end | |||
|id=chr17:46970128..46970132,+ | |||
|ontology_enrichment_celltype=CL:0000183!1.71e-07!59;CL:0000187!2.83e-07!54;CL:0000680!3.89e-07!57;CL:0000056!3.89e-07!57;CL:0000355!3.89e-07!57 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,4.68e-08,55;CL:0000680,5.42e-08,58;CL:0000056,5.42e-08,58;CL:0000355,5.42e-08,58;CL:0000192,8.24e-07,43;CL:0000514,8.24e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.14e-14!239;DOID:162!4.17e-13!235;DOID:0050687!2.74e-10!143;DOID:305!2.95e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!7.73e-10!238;UBERON:0009142!7.73e-10!238;UBERON:0002100!1.35e-08!216;UBERON:0000481!9.11e-08!347;UBERON:0000486!1.48e-07!82;UBERON:0000914!1.88e-07!83;UBERON:0002329!1.88e-07!83;UBERON:0003077!1.88e-07!83;UBERON:0003059!1.88e-07!83;UBERON:0007282!1.88e-07!83;UBERON:0009618!1.88e-07!83;UBERON:0007285!1.88e-07!83;UBERON:0004290!1.91e-07!70;UBERON:0001134!2.21e-07!61;UBERON:0002036!2.21e-07!61;UBERON:0003082!2.21e-07!61;UBERON:0002385!2.85e-07!63;UBERON:0001015!2.85e-07!63;UBERON:0000383!2.85e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.72e-09;9!UBERON:0001557;7.72e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.57e-10,199;UBERON:0001737,9.53e-10,9;UBERON:0003104,1.01e-08,160;UBERON:0009142,1.01e-08,160;UBERON:0002329,1.96e-08,71;UBERON:0003059,1.96e-08,71;UBERON:0007282,1.96e-08,71;UBERON:0004290,1.96e-08,71;UBERON:0009618,1.96e-08,71;UBERON:0007503,2.73e-08,78;UBERON:0003077,3.29e-08,72;UBERON:0007285,3.29e-08,72;UBERON:0007524,5.42e-08,73;UBERON:0001134,5.91e-08,62;UBERON:0002036,5.91e-08,62;UBERON:0003082,5.91e-08,62;UBERON:0005256,7.98e-08,122;UBERON:0002385,1.71e-07,64;UBERON:0001015,1.71e-07,64;UBERON:0000383,1.71e-07,64;UBERON:0000486,8.13e-07,83 | |||
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| |||
|short_description=p3@ATP5G1 | |||
}} |
Revision as of 14:18, 11 September 2013
Short description: | p3@ATP5G1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ATP5G1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000513347, ENST00000514759_5end |
EntrezGene: | ATP5G1 |
HGNC: | 841 |
UniProt: | D6RCS8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 4.68e-08 | 55 |
muscle precursor cell | 5.42e-08 | 58 |
myoblast | 5.42e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.42e-08 | 58 |
smooth muscle cell | 8.24e-07 | 43 |
smooth muscle myoblast | 8.24e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.57e-10 | 199 |
larynx | 9.53e-10 | 9 |
mesenchyme | 1.01e-08 | 160 |
entire embryonic mesenchyme | 1.01e-08 | 160 |
somite | 1.96e-08 | 71 |
presomitic mesoderm | 1.96e-08 | 71 |
presumptive segmental plate | 1.96e-08 | 71 |
dermomyotome | 1.96e-08 | 71 |
trunk paraxial mesoderm | 1.96e-08 | 71 |
epithelial vesicle | 2.73e-08 | 78 |
paraxial mesoderm | 3.29e-08 | 72 |
presumptive paraxial mesoderm | 3.29e-08 | 72 |
dense mesenchyme tissue | 5.42e-08 | 73 |
skeletal muscle tissue | 5.91e-08 | 62 |
striated muscle tissue | 5.91e-08 | 62 |
myotome | 5.91e-08 | 62 |
trunk mesenchyme | 7.98e-08 | 122 |
muscle tissue | 1.71e-07 | 64 |
musculature | 1.71e-07 | 64 |
musculature of body | 1.71e-07 | 64 |
multilaminar epithelium | 8.13e-07 | 83 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.