FFCP PHASE1:Hg19::chr19:54704677..54704683,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6203 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10442 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000484121_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_RPS9_5end | |||
|id=chr19:54704677..54704683,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.79e-13!180;CL:0000183!8.92e-13!59;CL:0000144!1.34e-11!625;CL:0000393!1.56e-11!60;CL:0000211!1.56e-11!60;CL:0000187!5.03e-11!54;CL:0002371!4.66e-10!591;CL:0000192!6.17e-10!42;CL:0000514!6.17e-10!42;CL:0000680!9.78e-10!57;CL:0000056!9.78e-10!57;CL:0000355!9.78e-10!57;CL:0000012!1.64e-08!682;CL:0000222!3.57e-08!119;CL:0000548!5.19e-08!679;CL:0000004!5.19e-08!679;CL:0000255!5.19e-08!679;CL:0002321!3.34e-07!248;CL:0000359!4.13e-07!32;CL:0000220!4.14e-07!246;CL:0000034!5.53e-07!444;CL:0000003!8.40e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.92e-08;43!CL:0000187;1.50e-07;55!CL:0000359;7.17e-07;32!CL:0000393;8.64e-07;61!CL:0000211;8.64e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.77e-12,61;CL:0000211,4.77e-12,61;CL:0000187,8.07e-12,55;CL:0000192,2.46e-10,43;CL:0000514,2.46e-10,43;CL:0000680,2.80e-10,58;CL:0000056,2.80e-10,58;CL:0000355,2.80e-10,58;CL:0000222,3.63e-09,121;CL:0000034,1.25e-07,441;CL:0000359,3.73e-07,32;CL:0002321,4.55e-07,250;CL:0000723,9.83e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;5.92e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.39e-10!83;UBERON:0002329!1.39e-10!83;UBERON:0003077!1.39e-10!83;UBERON:0003059!1.39e-10!83;UBERON:0007282!1.39e-10!83;UBERON:0009618!1.39e-10!83;UBERON:0007285!1.39e-10!83;UBERON:0004290!1.73e-09!70;UBERON:0001134!1.91e-08!61;UBERON:0002036!1.91e-08!61;UBERON:0003082!1.91e-08!61;UBERON:0005256!2.43e-08!143;UBERON:0002385!1.98e-07!63;UBERON:0001015!1.98e-07!63;UBERON:0000383!1.98e-07!63;UBERON:0000486!1.99e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.11e-12,78;UBERON:0003077,1.88e-10,72;UBERON:0007285,1.88e-10,72;UBERON:0007524,2.20e-10,73;UBERON:0002329,2.20e-10,71;UBERON:0003059,2.20e-10,71;UBERON:0007282,2.20e-10,71;UBERON:0004290,2.20e-10,71;UBERON:0009618,2.20e-10,71;UBERON:0001134,6.30e-09,62;UBERON:0002036,6.30e-09,62;UBERON:0003082,6.30e-09,62;UBERON:0002385,3.89e-08,64;UBERON:0001015,3.89e-08,64;UBERON:0000383,3.89e-08,64;UBERON:0000486,1.13e-07,83;UBERON:0003104,3.19e-07,160;UBERON:0009142,3.19e-07,160 | |||
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| |||
|short_description=p4@RPS9 | |||
}} |
Revision as of 22:19, 11 September 2013
Short description: | p4@RPS9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RPS9_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000484121_5end |
EntrezGene: | RPS9 |
HGNC: | 10442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.77e-12 | 61 |
electrically active cell | 4.77e-12 | 61 |
muscle cell | 8.07e-12 | 55 |
smooth muscle cell | 2.46e-10 | 43 |
smooth muscle myoblast | 2.46e-10 | 43 |
muscle precursor cell | 2.80e-10 | 58 |
myoblast | 2.80e-10 | 58 |
multi-potent skeletal muscle stem cell | 2.80e-10 | 58 |
mesodermal cell | 3.63e-09 | 121 |
stem cell | 1.25e-07 | 441 |
vascular associated smooth muscle cell | 3.73e-07 | 32 |
embryonic cell | 4.55e-07 | 250 |
somatic stem cell | 9.83e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.11e-12 | 78 |
paraxial mesoderm | 1.88e-10 | 72 |
presumptive paraxial mesoderm | 1.88e-10 | 72 |
dense mesenchyme tissue | 2.20e-10 | 73 |
somite | 2.20e-10 | 71 |
presomitic mesoderm | 2.20e-10 | 71 |
presumptive segmental plate | 2.20e-10 | 71 |
dermomyotome | 2.20e-10 | 71 |
trunk paraxial mesoderm | 2.20e-10 | 71 |
skeletal muscle tissue | 6.30e-09 | 62 |
striated muscle tissue | 6.30e-09 | 62 |
myotome | 6.30e-09 | 62 |
muscle tissue | 3.89e-08 | 64 |
musculature | 3.89e-08 | 64 |
musculature of body | 3.89e-08 | 64 |
multilaminar epithelium | 1.13e-07 | 83 |
mesenchyme | 3.19e-07 | 160 |
entire embryonic mesenchyme | 3.19e-07 | 160 |
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