FFCP PHASE1:Hg19::chr2:151343965..151343981,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=390|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=671|TSSclassifier=W|UniProt=|association_with_transcript=193bp_to_uc002txe.2,uc002txf.2_5end|description=CAGE_peak_2_at_RND3_5end|id=chr2:151343965..151343981,-|ontology_enrichment_celltype=CL:0000055!1.17e-08!180;CL:0000192!9.54e-07!42;CL:0000514!9.54e-07!42;CL:0000680!9.90e-07!57;CL:0000056!9.90e-07!57;CL:0000355!9.90e-07!57|ontology_enrichment_celltype_v019=CL:0002537;1.79e-10;5!CL:0000349;3.01e-10;19!CL:0002541;8.39e-07;3|ontology_enrichment_celltype_v019_2=CL:0002537,1.75e-10,5;CL:0000349,2.80e-10,19;CL:0002541,8.52e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004923!2.43e-10!57;UBERON:0000486!1.98e-08!82;UBERON:0004573!2.38e-08!33;UBERON:0004571!2.38e-08!33;UBERON:0000947!1.91e-07!21;UBERON:0010191!1.91e-07!21;UBERON:0002385!3.13e-07!63;UBERON:0001015!3.13e-07!63;UBERON:0000383!3.13e-07!63;UBERON:0004290!4.02e-07!70;UBERON:0004871!4.20e-07!8;UBERON:0001637!5.44e-07!42;UBERON:0003509!5.44e-07!42;UBERON:0004572!5.44e-07!42;UBERON:0005156!7.31e-07!59;UBERON:0000990!7.31e-07!59;UBERON:0001134!8.80e-07!61;UBERON:0002036!8.80e-07!61;UBERON:0003082!8.80e-07!61|ontology_enrichment_uberon_v019=UBERON:0005631;7.97e-15;10!UBERON:0000158;7.97e-15;10!UBERON:0000305;8.71e-10;7!UBERON:0000478;1.58e-07;24!UBERON:0000947;2.36e-07;21!UBERON:0010191;2.36e-07;21!UBERON:0004573;5.92e-07;33!UBERON:0004571;5.92e-07;33!UBERON:0003124;8.39e-07;3!UBERON:0000920;8.39e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0004871,1.63e-11,8;UBERON:0005631,5.34e-10,14;UBERON:0000158,5.34e-10,14;UBERON:0000305,7.26e-10,7;UBERON:0004923,6.79e-09,66;UBERON:0004573,5.64e-08,33;UBERON:0004571,5.64e-08,33;UBERON:0000478,1.49e-07,24;UBERON:0000486,1.51e-07,83;UBERON:0000947,1.92e-07,21;UBERON:0010191,1.92e-07,21;UBERON:0000920,8.52e-07,3|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0.436882744260345,1.58260186937072,0,0,0.672325146451775,1.20538905604795,0,0.975865597581014,0,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,1.204823675113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,1.00267582127178,0.289693037921647,0,0,5.2939497611878,0.221729397462564,1.66886092816939,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,1.13061588384802,0,0,0,0,0,0,0,0,0,0,1.62028389576352,0,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,1.19168262731897,4.30254931123221,1.77334191099179,0,0,0.24666754841716,0,0,0,0,0,0.937285727335186,0.936480230490962,1.1409436430889,0.448346041655403,0,0,0,1.02077085627447,0.737005903870608,0.309977343527296,1.18800285728205,1.23633464639278,0,0,0,0.125118519871964,1.10825646193673,0,26.6644382345147,0.45071417671979,0.113432183160021,0.538168907066586,0.427114777637135,0.211931901159562,0.300091096084402,0.309157587715317,0.515281080091258,0,0.168776332241266,0.194874010322397,0,0.276149695926898,0,0.355009592516614,0.10075209822764,0,0,0,0.286804595389004,0.243947412259191,0.132529768321485,0,0,0.252320850875628,0,1.56449532329816,0.643240938192885,0,0.928735856063958,0,0.118306800039844,0.168584690078102,0.241011029883482,0.330881918197182,0.217879444092406,0,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,2.57351715447788,0,0,0,0.277765335475589,2.6064664424826,0,7.21656710126366,0.115930404975077,0.117408694235822,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0.626909658919938,0,0,0,0,0,0,0,0.126995788584338,0.381988425558278,0,1.71072446022705,0.102827492703324,1.50171528921959,0,0,0,0,12.1515412812311,0,0,52.6557470838044,34.3224541807508,0,0,0,0,0.542621605391443,0,0,0,0,1.80863626235752,0.871533458600294,0.099972991182057,0,0,0,0.479249710983165,2.29723871668228,0,5.21212704003285,1.43833425785268,0.895304816199478,0,0,0,0,0.254094624222463,2.60279707715243,0,0,0.637938751653163,0,0,0,0,0,0,0.415941723061614,1.78428988797162,0.630809660135739,0,3.00946099727719,0,0,0,0.553107505625109,1.04260337361699,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0.640695746278505,3.07024349440022,0.160853921143607,0,0.154209693802656,0.887808626565635,0.328508624055237,0,0.464841513839837,0.120859449591622,0.200506470303285,0.0920809889358963,33.5258188640652,0.728364672026868,0.393373244878272,0.451199612907412,0.693138033939733,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0.512900250232778,0.328014645699706,6.50756789328606,1.64865618636356,0,0,0,0.650060246036521,6.42735719376638,0,1.23238893691716,0.614014698904518,0,0.214840489736547,0,0,0.0890320356467374,0.165284915360978,0.192190067365106,0,0.10115778085555,1.85938219718914,5.98143458978216,4.1822236209636,0.308033580176089,3.19383618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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=390 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=671 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=193bp_to_uc002txe.2,uc002txf.2_5end | |||
|description=CAGE_peak_2_at_RND3_5end | |||
|id=chr2:151343965..151343981,- | |||
|ontology_enrichment_celltype=CL:0000055!1.17e-08!180;CL:0000192!9.54e-07!42;CL:0000514!9.54e-07!42;CL:0000680!9.90e-07!57;CL:0000056!9.90e-07!57;CL:0000355!9.90e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002537;1.79e-10;5!CL:0000349;3.01e-10;19!CL:0002541;8.39e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,1.75e-10,5;CL:0000349,2.80e-10,19;CL:0002541,8.52e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!2.43e-10!57;UBERON:0000486!1.98e-08!82;UBERON:0004573!2.38e-08!33;UBERON:0004571!2.38e-08!33;UBERON:0000947!1.91e-07!21;UBERON:0010191!1.91e-07!21;UBERON:0002385!3.13e-07!63;UBERON:0001015!3.13e-07!63;UBERON:0000383!3.13e-07!63;UBERON:0004290!4.02e-07!70;UBERON:0004871!4.20e-07!8;UBERON:0001637!5.44e-07!42;UBERON:0003509!5.44e-07!42;UBERON:0004572!5.44e-07!42;UBERON:0005156!7.31e-07!59;UBERON:0000990!7.31e-07!59;UBERON:0001134!8.80e-07!61;UBERON:0002036!8.80e-07!61;UBERON:0003082!8.80e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;7.97e-15;10!UBERON:0000158;7.97e-15;10!UBERON:0000305;8.71e-10;7!UBERON:0000478;1.58e-07;24!UBERON:0000947;2.36e-07;21!UBERON:0010191;2.36e-07;21!UBERON:0004573;5.92e-07;33!UBERON:0004571;5.92e-07;33!UBERON:0003124;8.39e-07;3!UBERON:0000920;8.39e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004871,1.63e-11,8;UBERON:0005631,5.34e-10,14;UBERON:0000158,5.34e-10,14;UBERON:0000305,7.26e-10,7;UBERON:0004923,6.79e-09,66;UBERON:0004573,5.64e-08,33;UBERON:0004571,5.64e-08,33;UBERON:0000478,1.49e-07,24;UBERON:0000486,1.51e-07,83;UBERON:0000947,1.92e-07,21;UBERON:0010191,1.92e-07,21;UBERON:0000920,8.52e-07,3 | |||
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| |||
|short_description=p2@RND3 | |||
}} |
Revision as of 13:58, 12 September 2013
Short description: | p2@RND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RND3_5end |
Coexpression cluster: | NA |
Association with transcript: | 193bp_to_uc002txe.2, uc002txf.2_5end |
EntrezGene: | RND3 |
HGNC: | 671 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 1.75e-10 | 5 |
extraembryonic cell | 2.80e-10 | 19 |
chorionic membrane mesenchymal stem cell | 8.52e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
somatic layer of lateral plate mesoderm | 1.63e-11 | 8 |
extraembryonic membrane | 5.34e-10 | 14 |
membranous layer | 5.34e-10 | 14 |
amnion | 7.26e-10 | 7 |
organ component layer | 6.79e-09 | 66 |
systemic artery | 5.64e-08 | 33 |
systemic arterial system | 5.64e-08 | 33 |
extraembryonic structure | 1.49e-07 | 24 |
multilaminar epithelium | 1.51e-07 | 83 |
aorta | 1.92e-07 | 21 |
aortic system | 1.92e-07 | 21 |
egg chorion | 8.52e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.