UBERON:0000478

Name:	extraembryonic structure
Namespace:	FANTOM
Definition:	"Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH]
Xrefs:	Expandlinks: AAO:0010020 AEO:0000042 BILA:0000042 CARO:0000042 EHDAA2:0003042 EHDAA:46 EMAPA:16042 FBbt:00005835 FMA:85537 HAO:0000042 ncithesaurus:Extraembryonic_Structure SCTID:314908006 TAO:0000020 TGMA:0001843 VHOG:0000292 XAO:0004005 ZFA:0000020
Synonyms:	"extra-embryonic structure" EXACT [] "extraembryonic component" RELATED [] "extraembryonic tissue" RELATED []
Comments:	see also conceptus extraembryonic component in EHDAA2
Alt_id:	UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020
Subset:	uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000061(anatomical structure)
disjoint_from:	UBERON:0002050(embryonic structure)
part_of:	UBERON:0016887(entire extraembryonic component)

Children

is a:	UBERON:0000920 (egg chorion),UBERON:0001987 (placenta),UBERON:0002331 (umbilical cord),UBERON:0005292 (extraembryonic tissue),UBERON:0005631 (extraembryonic membrane),UBERON:0005971 (amniotic fold),UBERON:0007806 (connecting stalk)
part of:	FF:0000218 (chicken embryo extraembryonic tissue day7 HH32),FF:0000219 (chicken embryo extraembryonic tissue day15 HH41),CL:0000349 (extraembryonic cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10021-101D3 (placenta, adult, pool1)
• 10057-101H3 (umbilical cord, fetal, donor1)
• 10091-102C1
• 10230-103I5 (chicken embryo, extraembryonic tissue, day07 (HH32))
• 10231-103I6 (chicken embryo, extraembryonic tissue, day15 (HH41))
• 10449-106F8 (cord blood derived cell line:COBL-a untreated)
• 10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
• 10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
• 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
• 11278-116H9 (Placental Epithelial Cells, donor1)

... further results Mouse (Mus musculus)

• 10021-101D3 (placenta, adult, pool1)
• 10057-101H3 (umbilical cord, fetal, donor1)
• 10091-102C1
• 10230-103I5 (chicken embryo, extraembryonic tissue, day07 (HH32))
• 10231-103I6 (chicken embryo, extraembryonic tissue, day15 (HH41))
• 10449-106F8 (cord blood derived cell line:COBL-a untreated)
• 10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
• 10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
• 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
• 11278-116H9 (Placental Epithelial Cells, donor1)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000478 (extraembryonic structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
4.4e-90	FFCP PHASE1:Hg19::chr3:55384975..55384986,-	p1@ENST00000469806
4.4e-90	FFCP PHASE2:Hg19::chr3:55384975..55384986,-	p1@ENST00000469806
1.78e-89	FFCP PHASE2:Hg19::chr20:61287795..61287809,+	p4@SLCO4A1
1.78e-89	FFCP PHASE1:Hg19::chr20:61287795..61287809,+	p4@SLCO4A1
1.58e-86	FFCP PHASE2:Mm9::chr13:61040767..61040776,-	p@chr13:61040767..61040776, -
1.58e-86	FFCP PHASE2:Mm9::chr13:27335609..27335622,+	p@chr13:27335609..27335622, +
1.58e-86	FFCP PHASE2:Mm9::chr1:193090931..193090940,+	p@chr1:193090931..193090940, +
1.58e-86	FFCP PHASE1:Mm9::chr6:48879890..48879896,+	p1@1600015I10Rik
1.58e-86	FFCP PHASE1:Mm9::chr13:27339701..27339760,+	p@chr13:27339701..27339760, +
1.58e-86	FFCP PHASE2:Mm9::chr7:17788797..17788806,+	p4@Psg29
1.58e-86	FFCP PHASE1:Mm9::chr6:97907033..97907043,+	p@chr6:97907033..97907043, +
1.58e-86	FFCP PHASE2:Mm9::chr11:55223511..55223524,-	p@chr11:55223511..55223524, -
1.58e-86	FFCP PHASE2:Mm9::chr14:26461997..26462039,+	p@chr14:26461997..26462039, +
1.58e-86	FFCP PHASE1:Mm9::chr11:55223511..55223524,-	p@chr11:55223511..55223524, -
1.58e-86	FFCP PHASE2:Mm9::chr13:27337674..27337690,+	p@chr13:27337674..27337690, +
1.58e-86	FFCP PHASE1:Mm9::chr13:61265572..61265576,-	p2@Ctsr
1.58e-86	FFCP PHASE1:Mm9::chr14:26461997..26462039,+	p@chr14:26461997..26462039, +
1.58e-86	FFCP PHASE2:Mm9::chr7:17798686..17798694,+	p@chr7:17798686..17798694, +
1.58e-86	FFCP PHASE1:Mm9::chr13:61040767..61040776,-	p@chr13:61040767..61040776, -
1.58e-86	FFCP PHASE2:Mm9::chr13:27288509..27288515,+	p1@Prl3c1
1.58e-86	FFCP PHASE1:Mm9::chr7:17749305..17749310,+	p@chr7:17749305..17749310, +
1.58e-86	FFCP PHASE2:Mm9::chr6:97907033..97907043,+	p@chr6:97907033..97907043, +
1.58e-86	FFCP PHASE2:Mm9::chrX:136335482..136335502,+	p3@Cldn2
1.58e-86	FFCP PHASE2:Mm9::chr13:27339701..27339760,+	p@chr13:27339701..27339760, +
1.58e-86	FFCP PHASE1:Mm9::chr7:17798686..17798694,+	p@chr7:17798686..17798694, +
1.58e-86	FFCP PHASE1:Mm9::chr5:125523411..125523420,-	p24@Ncor2
1.58e-86	FFCP PHASE2:Mm9::chr15:78342035..78342046,-	p@chr15:78342035..78342046, -
1.58e-86	FFCP PHASE1:Mm9::chrX:136335482..136335502,+	p3@Cldn2
1.58e-86	FFCP PHASE1:Mm9::chr5:114862554..114862564,+	p@chr5:114862554..114862564, +
1.58e-86	FFCP PHASE1:Mm9::chr7:17788797..17788806,+	p4@Psg29
1.58e-86	FFCP PHASE1:Mm9::chr1:71787899..71787904,-	p@chr1:71787899..71787904, -
1.58e-86	FFCP PHASE2:Mm9::chr13:33048652..33048685,+	p@chr13:33048652..33048685, +
1.58e-86	FFCP PHASE1:Mm9::chr13:27337674..27337690,+	p@chr13:27337674..27337690, +
1.58e-86	FFCP PHASE2:Mm9::chrX:136335507..136335518,+	p5@Cldn2
1.58e-86	FFCP PHASE2:Mm9::chr13:61041994..61042014,-	p@chr13:61041994..61042014, -
1.58e-86	FFCP PHASE2:Mm9::chr1:71787899..71787904,-	p@chr1:71787899..71787904, -
1.58e-86	FFCP PHASE2:Mm9::chr5:114862554..114862564,+	p@chr5:114862554..114862564, +
1.58e-86	FFCP PHASE2:Mm9::chr14:102036767..102036774,-	p@chr14:102036767..102036774, -
1.58e-86	FFCP PHASE2:Mm9::chr6:48879890..48879896,+	p1@1600015I10Rik
1.58e-86	FFCP PHASE2:Mm9::chr5:125523411..125523420,-	p24@Ncor2
1.58e-86	FFCP PHASE1:Mm9::chr13:27341334..27341356,-	p@chr13:27341334..27341356, -
1.58e-86	FFCP PHASE2:Mm9::chr13:61105387..61105403,+	p@chr13:61105387..61105403, +
1.58e-86	FFCP PHASE2:Mm9::chr5:115211954..115211984,-	p@chr5:115211954..115211984, -
1.58e-86	FFCP PHASE1:Mm9::chrX:136335507..136335518,+	p5@Cldn2
1.58e-86	FFCP PHASE1:Mm9::chr5:115211954..115211984,-	p@chr5:115211954..115211984, -
1.58e-86	FFCP PHASE1:Mm9::chr13:61041994..61042014,-	p@chr13:61041994..61042014, -
1.58e-86	FFCP PHASE2:Mm9::chrX:141915185..141915200,-	p@chrX:141915185..141915200, -
1.58e-86	FFCP PHASE1:Mm9::chr9:111108246..111108253,+	p@chr9:111108246..111108253, +
1.58e-86	FFCP PHASE2:Mm9::chr9:111108246..111108253,+	p@chr9:111108246..111108253, +
1.58e-86	FFCP PHASE1:Mm9::chr15:78342035..78342046,-	p@chr15:78342035..78342046, -
1.58e-86	FFCP PHASE2:Mm9::chrX:136335520..136335531,+	p4@Cldn2
1.58e-86	FFCP PHASE1:Mm9::chr9:57927144..57927163,+	p19@Stra6
1.58e-86	FFCP PHASE1:Mm9::chr14:102036767..102036774,-	p@chr14:102036767..102036774, -
1.58e-86	FFCP PHASE2:Mm9::chr7:17788842..17788851,+	p2@Psg29
1.58e-86	FFCP PHASE1:Mm9::chr13:27335609..27335622,+	p@chr13:27335609..27335622, +
1.58e-86	FFCP PHASE1:Mm9::chrX:141915185..141915200,-	p@chrX:141915185..141915200, -
1.58e-86	FFCP PHASE1:Mm9::chrX:136335520..136335531,+	p4@Cldn2
1.58e-86	FFCP PHASE1:Mm9::chr13:61105387..61105403,+	p@chr13:61105387..61105403, +
1.58e-86	FFCP PHASE1:Mm9::chr7:17788842..17788851,+	p2@Psg29
1.58e-86	FFCP PHASE2:Mm9::chr13:61265572..61265576,-	p2@Ctsr
1.58e-86	FFCP PHASE2:Mm9::chr1:63260883..63260896,-	p3@Gpr1
1.58e-86	FFCP PHASE2:Mm9::chr9:57927144..57927163,+	p19@Stra6
1.58e-86	FFCP PHASE2:Mm9::chr7:17749305..17749310,+	p@chr7:17749305..17749310, +
1.58e-86	FFCP PHASE1:Mm9::chr1:63260883..63260896,-	p3@Gpr1
1.58e-86	FFCP PHASE1:Mm9::chr13:33048652..33048685,+	p@chr13:33048652..33048685, +
1.58e-86	FFCP PHASE1:Mm9::chr13:27288509..27288515,+	p1@Prl3c1
1.58e-86	FFCP PHASE2:Mm9::chr13:27341334..27341356,-	p@chr13:27341334..27341356, -
1.58e-86	FFCP PHASE1:Mm9::chr1:193090931..193090940,+	p@chr1:193090931..193090940, +
1.58e-86	FFCP PHASE1:Mm9::chr6:145765021..145765041,+	p@chr6:145765021..145765041, +
1.58e-86	FFCP PHASE2:Mm9::chr6:145765021..145765041,+	p@chr6:145765021..145765041, +
1.2e-83	FFCP PHASE2:Hg19::chr11:8857295..8857310,-	p21@ST5
1.2e-83	FFCP PHASE1:Hg19::chr11:8857295..8857310,-	p21@ST5
1.39e-83	FFCP PHASE2:Hg19::chr11:8857248..8857269,-	p16@ST5
1.39e-83	FFCP PHASE1:Hg19::chr11:8857248..8857269,-	p16@ST5
2.0e-83	FFCP PHASE2:Hg19::chr2:237682990..237683009,+	p@chr2:237682990..237683009, +
2.0e-83	FFCP PHASE1:Hg19::chr2:237682990..237683009,+	p@chr2:237682990..237683009, +
4.85e-82	FFCP PHASE1:Hg19::chr2:237683156..237683171,+	p@chr2:237683156..237683171, +
4.85e-82	FFCP PHASE2:Hg19::chr2:237683156..237683171,+	p@chr2:237683156..237683171, +
1.89e-81	FFCP PHASE1:Hg19::chr19:36592982..36592993,+	p@chr19:36592982..36592993, +
1.89e-81	FFCP PHASE2:Hg19::chr19:36592982..36592993,+	p@chr19:36592982..36592993, +
3.49e-78	FFCP PHASE2:Hg19::chr11:8857215..8857232,-	p17@ST5
3.49e-78	FFCP PHASE1:Hg19::chr11:8857215..8857232,-	p17@ST5
2.4e-75	FFCP PHASE2:Hg19::chr15:68344995..68345013,+	p@chr15:68344995..68345013, +
2.4e-75	FFCP PHASE1:Hg19::chr15:68344995..68345013,+	p@chr15:68344995..68345013, +
1.93e-73	FFCP PHASE2:Hg19::chr2:25862154..25862172,-	p14@DTNB
1.93e-73	FFCP PHASE1:Hg19::chr2:25862154..25862172,-	p14@DTNB
2.39e-73	FFCP PHASE2:Hg19::chr2:237683212..237683239,+	p@chr2:237683212..237683239, +
2.39e-73	FFCP PHASE1:Hg19::chr2:237683212..237683239,+	p@chr2:237683212..237683239, +
3.28e-70	FFCP PHASE1:Hg19::chr2:237682954..237682971,+	p@chr2:237682954..237682971, +
3.28e-70	FFCP PHASE2:Hg19::chr2:237682954..237682971,+	p@chr2:237682954..237682971, +
3.51e-70	FFCP PHASE1:Hg19::chr13:43636294..43636306,+	p@chr13:43636294..43636306, +
3.51e-70	FFCP PHASE2:Hg19::chr13:43636294..43636306,+	p@chr13:43636294..43636306, +
8.51e-69	FFCP PHASE2:Hg19::chr19:36592925..36592948,+	p@chr19:36592925..36592948, +
8.51e-69	FFCP PHASE1:Hg19::chr19:36592925..36592948,+	p@chr19:36592925..36592948, +
3.88e-66	FFCP PHASE1:Hg19::chr18:6286777..6286797,+	p@chr18:6286777..6286797, +
3.88e-66	FFCP PHASE2:Hg19::chr18:6286777..6286797,+	p@chr18:6286777..6286797, +
1.33e-65	FFCP PHASE1:Mm9::chrX:103450706..103450715,-	p1@Fnd3c2
1.33e-65	FFCP PHASE2:Mm9::chr9:57927165..57927189,+	p7@Stra6
1.33e-65	FFCP PHASE1:Mm9::chr7:17735559..17735585,+	p1@Ceacam3
1.33e-65	FFCP PHASE2:Mm9::chr12:110842625..110842630,-	p@chr12:110842625..110842630, -

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