FFCP PHASE1:Mm9::chr10:61885175..61885196,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=216019|HGNC=|MCL_coexpression_id=24|UniProt=Q91W97|association_with_transcript=8bp_to_NM_145419,uc007fhc.1_5end|description=CAGE_peak_1_at_Hkdc1_5end|id=chr10:61885175..61885196,-|ontology_enrichment_celltype=CL:0002563!6.02e-07!9;CL:0002251!6.02e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,8.30e-08,9;CL:0002251,8.30e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!8.26e-27!43;UBERON:0005409!3.31e-25!59;UBERON:0004119!7.84e-16!130;UBERON:0000925!7.84e-16!130;UBERON:0006595!7.84e-16!130;UBERON:0001007!6.61e-15!128;UBERON:0001555!6.61e-15!128;UBERON:0007026!6.61e-15!128;UBERON:0004921!9.16e-14!126;UBERON:0004185!9.16e-14!126;UBERON:0000344!2.45e-11!15;UBERON:0001242!6.48e-10!13;UBERON:0000060!6.48e-10!13;UBERON:0001262!6.48e-10!13;UBERON:0004786!6.48e-10!13;UBERON:0002108!3.02e-09!16;UBERON:0004923!5.82e-09!24;UBERON:0001045!4.92e-07!13;UBERON:0003350!6.02e-07!9;UBERON:0004808!6.02e-07!9;UBERON:0001277!6.02e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.37e-24,31;UBERON:0005409,3.23e-21,47;UBERON:0000344,6.86e-13,15;UBERON:0001242,3.05e-11,13;UBERON:0001262,3.05e-11,13;UBERON:0004786,3.05e-11,13;UBERON:0004119,6.06e-11,118;UBERON:0000925,6.06e-11,118;UBERON:0006595,6.06e-11,118;UBERON:0001007,4.18e-10,116;UBERON:0001555,4.18e-10,116;UBERON:0007026,4.18e-10,116;UBERON:0004923,5.20e-10,24;UBERON:0004921,4.35e-09,114;UBERON:0003350,8.30e-08,9;UBERON:0004808,8.30e-08,9;UBERON:0001277,8.30e-08,9;UBERON:0001264,3.09e-07,12|phase1_expression=0,206.942416730141,140.594764971367,546.552829831442,525.439620713718,26.6928042339905,35.2755087299244,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,110.074786881864,106.904724977301,96.4709699713234,77.5371593086335,68.5198519941127,192.683747328763,170.624397847473,54.1022445998943,0,0,0,6.35473563452804,14.7948834369058,11.637653306955,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589257170947335,0,0,0,0,8.40607017234866,0,2.03991400112325,0,0,0,9.40977614882737,0,0,0,0,0,0,0,0,0,0,30.2587281255509,0,0,1.90833859442749,0.913396434936424,1.38369298353635,0.60289056221049,0.117588707135705,0.376999773989026,95.9116474809371,0,0,0,0,0,39.1422698558057,0,0.209446706813455,176.520825149137,0,0,0,0,0,0,0,0,0,0,0.305518091550949,0,0,0.631325567659422,0.130120442962704,0.689706313300419,1.80062129805349,8.43946979880004,19.5264752564311,46.7615079039702,33.2641122187037,1.03481348295606,0.431135985865684,1.70195472151037,0.351902248327898,0,0.278047249225598,0.696504333044333,0.823128545631774,0.59710280045548,0,0,0,0.621377317606506,0.703578179943289,0,0.23674473558521,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0,277.55177770639,160.785944531435,2.34617075588757,4.18026009348789,15.3352278973291,45.3787930402521,55.8168890050624,74.9488966883483,137.138898786364,76.7497129013891,54.0370698920579,52.723465090905,43.4769914275638,140.215827750059,150.864358812537,182.811688847509,2.27601481143698,2.74196430263349,2.25415471346161,1.4255592949172,1.93952487167626,1.54298803758701,2.71917109634306,1.32849133181642,1.255989822731,1.23397163921801,1.48226313543574,5.83957870006329,6.2898878436225,6.2961391467759,7.91154473415161,10.8529721888588,22.4070749567649,9.78166867332756,0.810676133875177,0,0,0,0.312037673114561,0.252578877947112,0,0,2.77129785249907,1.13694847062291,1.30371981153621,2.20668611507745,2.58159273117352,2.01007508930179,3.57065461329021,4.48807390072937,1.41871629695572,2.43611158613652,0.637819074629948,1.80249646187312,3.28101465545202,3.47157740595628,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,0,0,0,0,0.164970122972535,5.30980553359851,10.9251286269742,13.9068836203785,31.8742584787468,35.4362271456927,27.3617281670095,29.7192537143454,14.9048829085777,13.1904030002347,1.8962205476149,6.32511651449993,6.18813259489121,0,0,0,0,0.177340233642274,0,0,0,11.9682571112492,10.1679394014634,0,0,0.161464426695906,0.0603129249281559,0,0,125.045278914206,0,0,2.27025554759545,0.555583582109135,0,0,0,0,0,0,0.954670618015114,1.73984796469624,6.70954241518601,12.0965981720417,6.48173717644853,16.5955548447095,6.20375993370175,5.45512807787217,0,72.8436149899876,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0.202725215290164,0,0.129920822977795,0.179026695667481,0,0,0,0,0.228620419965,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0,1.87806966329548,2.67417388775123,2.09613162627982,4.59608771125035,7.3341420174533,4.73880631649457,5.77654577265267,6.82282471762253,6.33698249725599,4.52703219326583,4.21386783614471,6.78666615491614,4.70970845436029,7.1444053692461,6.02598494913249,4.43691207066522,7.00546031365621,4.26876868389752,7.88599280486455,7.0990322463735,5.48403236878838,6.39524233182245,5.36423468367385,6.43071019976741,6.58540702341981,6.83981249738391,5.02475221229689,5.61142271657738,4.74540072496697,5.71325997778268,7.7753898202241,6.04253680625267,6.17301155139652,0,6.78401664491684,6.01638951335235,0,0,0.231867835620421|short_description=p1@Hkdc1}} | ||
|EntrezGene=216019 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=Q91W97 | |||
|association_with_transcript=8bp_to_NM_145419,uc007fhc.1_5end | |||
|description=CAGE_peak_1_at_Hkdc1_5end | |||
|id=chr10:61885175..61885196,- | |||
|ontology_enrichment_celltype=CL:0002563!6.02e-07!9;CL:0002251!6.02e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,8.30e-08,9;CL:0002251,8.30e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!8.26e-27!43;UBERON:0005409!3.31e-25!59;UBERON:0004119!7.84e-16!130;UBERON:0000925!7.84e-16!130;UBERON:0006595!7.84e-16!130;UBERON:0001007!6.61e-15!128;UBERON:0001555!6.61e-15!128;UBERON:0007026!6.61e-15!128;UBERON:0004921!9.16e-14!126;UBERON:0004185!9.16e-14!126;UBERON:0000344!2.45e-11!15;UBERON:0001242!6.48e-10!13;UBERON:0000060!6.48e-10!13;UBERON:0001262!6.48e-10!13;UBERON:0004786!6.48e-10!13;UBERON:0002108!3.02e-09!16;UBERON:0004923!5.82e-09!24;UBERON:0001045!4.92e-07!13;UBERON:0003350!6.02e-07!9;UBERON:0004808!6.02e-07!9;UBERON:0001277!6.02e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.37e-24,31;UBERON:0005409,3.23e-21,47;UBERON:0000344,6.86e-13,15;UBERON:0001242,3.05e-11,13;UBERON:0001262,3.05e-11,13;UBERON:0004786,3.05e-11,13;UBERON:0004119,6.06e-11,118;UBERON:0000925,6.06e-11,118;UBERON:0006595,6.06e-11,118;UBERON:0001007,4.18e-10,116;UBERON:0001555,4.18e-10,116;UBERON:0007026,4.18e-10,116;UBERON:0004923,5.20e-10,24;UBERON:0004921,4.35e-09,114;UBERON:0003350,8.30e-08,9;UBERON:0004808,8.30e-08,9;UBERON:0001277,8.30e-08,9;UBERON:0001264,3.09e-07,12 | |||
|phase1_expression=0,206.942416730141,140.594764971367,546.552829831442,525.439620713718,26.6928042339905,35.2755087299244,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,110.074786881864,106.904724977301,96.4709699713234,77.5371593086335,68.5198519941127,192.683747328763,170.624397847473,54.1022445998943,0,0,0,6.35473563452804,14.7948834369058,11.637653306955,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589257170947335,0,0,0,0,8.40607017234866,0,2.03991400112325,0,0,0,9.40977614882737,0,0,0,0,0,0,0,0,0,0,30.2587281255509,0,0,1.90833859442749,0.913396434936424,1.38369298353635,0.60289056221049,0.117588707135705,0.376999773989026,95.9116474809371,0,0,0,0,0,39.1422698558057,0,0.209446706813455,176.520825149137,0,0,0,0,0,0,0,0,0,0,0.305518091550949,0,0,0.631325567659422,0.130120442962704,0.689706313300419,1.80062129805349,8.43946979880004,19.5264752564311,46.7615079039702,33.2641122187037,1.03481348295606,0.431135985865684,1.70195472151037,0.351902248327898,0,0.278047249225598,0.696504333044333,0.823128545631774,0.59710280045548,0,0,0,0.621377317606506,0.703578179943289,0,0.23674473558521,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0,277.55177770639,160.785944531435,2.34617075588757,4.18026009348789,15.3352278973291,45.3787930402521,55.8168890050624,74.9488966883483,137.138898786364,76.7497129013891,54.0370698920579,52.723465090905,43.4769914275638,140.215827750059,150.864358812537,182.811688847509,2.27601481143698,2.74196430263349,2.25415471346161,1.4255592949172,1.93952487167626,1.54298803758701,2.71917109634306,1.32849133181642,1.255989822731,1.23397163921801,1.48226313543574,5.83957870006329,6.2898878436225,6.2961391467759,7.91154473415161,10.8529721888588,22.4070749567649,9.78166867332756,0.810676133875177,0,0,0,0.312037673114561,0.252578877947112,0,0,2.77129785249907,1.13694847062291,1.30371981153621,2.20668611507745,2.58159273117352,2.01007508930179,3.57065461329021,4.48807390072937,1.41871629695572,2.43611158613652,0.637819074629948,1.80249646187312,3.28101465545202,3.47157740595628,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,0,0,0,0,0.164970122972535,5.30980553359851,10.9251286269742,13.9068836203785,31.8742584787468,35.4362271456927,27.3617281670095,29.7192537143454,14.9048829085777,13.1904030002347,1.8962205476149,6.32511651449993,6.18813259489121,0,0,0,0,0.177340233642274,0,0,0,11.9682571112492,10.1679394014634,0,0,0.161464426695906,0.0603129249281559,0,0,125.045278914206,0,0,2.27025554759545,0.555583582109135,0,0,0,0,0,0,0.954670618015114,1.73984796469624,6.70954241518601,12.0965981720417,6.48173717644853,16.5955548447095,6.20375993370175,5.45512807787217,0,72.8436149899876,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0.202725215290164,0,0.129920822977795,0.179026695667481,0,0,0,0,0.228620419965,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0,1.87806966329548,2.67417388775123,2.09613162627982,4.59608771125035,7.3341420174533,4.73880631649457,5.77654577265267,6.82282471762253,6.33698249725599,4.52703219326583,4.21386783614471,6.78666615491614,4.70970845436029,7.1444053692461,6.02598494913249,4.43691207066522,7.00546031365621,4.26876868389752,7.88599280486455,7.0990322463735,5.48403236878838,6.39524233182245,5.36423468367385,6.43071019976741,6.58540702341981,6.83981249738391,5.02475221229689,5.61142271657738,4.74540072496697,5.71325997778268,7.7753898202241,6.04253680625267,6.17301155139652,0,6.78401664491684,6.01638951335235,0,0,0.231867835620421 | |||
|short_description=p1@Hkdc1 | |||
}} |
Revision as of 17:05, 12 September 2013
Short description: | p1@Hkdc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hkdc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | 8bp_to_NM_145419, uc007fhc.1_5end |
EntrezGene: | Hkdc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 8.30e-08 | 9 |
epithelial cell of alimentary canal | 8.30e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.37e-24 | 31 |
gastrointestinal system | 3.23e-21 | 47 |
mucosa | 6.86e-13 | 15 |
intestinal mucosa | 3.05e-11 | 13 |
wall of intestine | 3.05e-11 | 13 |
gastrointestinal system mucosa | 3.05e-11 | 13 |
endoderm-derived structure | 6.06e-11 | 118 |
endoderm | 6.06e-11 | 118 |
presumptive endoderm | 6.06e-11 | 118 |
digestive system | 4.18e-10 | 116 |
digestive tract | 4.18e-10 | 116 |
primitive gut | 4.18e-10 | 116 |
organ component layer | 5.20e-10 | 24 |
subdivision of digestive tract | 4.35e-09 | 114 |
epithelium of mucosa | 8.30e-08 | 9 |
gastrointestinal system epithelium | 8.30e-08 | 9 |
intestinal epithelium | 8.30e-08 | 9 |
pancreas | 3.09e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.