FFCP PHASE1:Hg19::chr5:89825328..89825422,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=116068|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26969|TSSclassifier=S|UniProt=Q7Z3D4,G5E9N8,A8K613|association_with_transcript=0bp_to_ENST00000315948,ENST00000453259,ENST00000500869,ENST00000509384,ENST00000554351,NM_198273,uc003kjr.2,uc003kjs.1,uc010jaz.1_5end|coexpression_cluster_id=C17|description=CAGE_peak_1_at_LYSMD3_5end|id=chr5:89825328..89825422,-|ontology_enrichment_celltype=CL:0000738!6.03e-18!140;CL:0002031!3.37e-15!124;CL:0000037!6.11e-13!172;CL:0000566!6.11e-13!172;CL:0000766!7.22e-13!76;CL:0002057!7.52e-13!42;CL:0002087!1.58e-12!119;CL:0002032!2.08e-12!165;CL:0000837!2.08e-12!165;CL:0000860!1.96e-11!45;CL:0000988!6.14e-11!182;CL:0000839!8.90e-11!70;CL:0000134!2.29e-10!358;CL:0000557!2.84e-10!71;CL:0002320!8.90e-10!365;CL:0002009!1.19e-08!65;CL:0000763!3.34e-08!112;CL:0000049!3.34e-08!112;CL:0002194!4.45e-08!63;CL:0000576!4.45e-08!63;CL:0000040!4.45e-08!63;CL:0000559!4.45e-08!63|ontology_enrichment_celltype_v019=CL:0000860;7.06e-15;33!CL:0002057;7.06e-15;33!CL:0000576;1.89e-09;48!CL:0000473;2.94e-09;39!CL:0000234;2.94e-09;39!CL:0000766;2.22e-07;69!CL:0002087;8.53e-07;104|ontology_enrichment_celltype_v019_2=CL:0000738,1.33e-18,136;CL:0002031,7.79e-16,120;CL:0000766,1.01e-13,72;CL:0000037,2.37e-13,168;CL:0002087,4.40e-13,115;CL:0000860,7.52e-13,42;CL:0002057,7.52e-13,42;CL:0002032,8.03e-13,161;CL:0000837,8.03e-13,161;CL:0000988,1.12e-11,177;CL:0000839,1.47e-11,66;CL:0000557,5.19e-11,67;CL:0000134,5.58e-11,354;CL:0002320,2.30e-10,361;CL:0000473,9.10e-10,48;CL:0000234,9.10e-10,48;CL:0002009,2.50e-09,61;CL:0002194,9.92e-09,59;CL:0000576,9.92e-09,59;CL:0000040,9.92e-09,59;CL:0000559,9.92e-09,59;CL:0000763,1.33e-08,108;CL:0000049,1.33e-08,108;CL:0000219,8.08e-07,386|ontology_enrichment_development_v019=CL:0002057;4.23e-10;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.73e-14!102;UBERON:0003061!2.73e-14!102;UBERON:0002193!6.99e-13!112;UBERON:0002384!1.75e-10!375;UBERON:0004765!4.58e-10!101;UBERON:0001434!4.58e-10!101;UBERON:0001474!4.98e-10!86;UBERON:0002371!7.59e-10!80;UBERON:0002405!7.67e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.20e-15,98;UBERON:0003061,5.20e-15,98;UBERON:0002193,1.75e-13,108;UBERON:0004765,2.99e-11,90;UBERON:0002384,4.32e-11,371;UBERON:0001474,1.23e-10,82;UBERON:0002371,1.75e-10,76;UBERON:0001434,2.37e-10,100;UBERON:0002405,2.98e-09,93|phase1_expression=19.6212649612201,13.9165340529139,24.244157504507,12.0087958023756,14.7497161161005,19.1914475302081,15.1979926900986,10.7392378482561,7.83556884599516,5.16041266653169,2.09340350391728,5.46103430325431,4.48403862988371,20.6689809443278,13.9186897805725,17.4804538077462,12.0538905604795,13.8758917173601,16.1017823600867,4.18611597461079,3.87601313364081,4.38836610069323,12.5943834337665,11.9080749813409,10.2944964467738,18.1099771622644,16.2559167110893,17.2376611076958,30.6824135942145,25.7165696725133,17.8038541813487,8.27479102031034,4.51808878167375,9.24385025416969,19.4442673456557,13.2217386213302,16.4416246027514,34.9017107375083,25.8702337236483,24.0882066494596,22.3915474239924,29.4743236077271,30.6514925484682,24.4269041149669,34.3867108756817,26.9268307918476,35.3292136096641,43.5837961303135,43.9783046671047,46.6061675561884,43.5473201099471,54.8638773341518,42.0589730498675,45.8294125344517,51.4620649058499,29.1775626291037,34.9319872074043,47.866102186803,31.526640914203,67.3950956859797,46.032273057531,29.6866170168045,26.9275937789203,29.4095077867559,47.3041058964592,41.4191214024532,56.0540024096018,49.4959870555784,50.0623601683393,59.9441211386122,42.9833646869692,74.7603601054756,59.4949288388863,10.985274888221,10.2050063983221,11.5312255029607,13.4794357375794,10.2120287132224,19.4477959903467,11.1154970059087,12.3328339863436,10.0465284570549,15.839662001519,20.753267227961,19.5692035849982,24.7503529088574,20.0197993518006,15.518315878771,13.8819423284821,11.4486450544244,26.7530095481441,20.5533016279829,21.0250275468876,27.7559790015954,44.8406850385229,16.8565814256049,32.4571120687825,18.4715058492107,32.0738338439234,18.3905144929746,44.6513505288019,34.5616898186355,46.7584148178987,21.5022181788385,21.5062312456631,21.4887877746113,24.3723477388514,13.8338625303729,12.6157567133082,13.1550323682941,13.8175008892924,17.3881851441032,39.1476526747839,30.2321135741376,30.3153019034433,18.6960415450984,26.0589935649306,26.8029407476451,31.3744418104184,28.3523218748446,22.7879208849746,21.8603970223126,29.9644486964768,30.9727598993693,22.4875307794223,23.9145024564457,22.1704559168683,32.8618991456314,26.4765793825672,29.6890027959738,7.31420598941885,9.38981203585091,18.0286212199378,20.9634708383048,9.02408239144601,18.105814870103,15.1104329939709,28.7114573478555,15.1255707462509,14.1906814376041,16.6886092816939,9.69245158683074,1.82147644146271,2.96627554227544,7.7891374477124,8.5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562902292135,29.6544556365222,13.0636224606924,13.8125921007944,6.79296311799095,10.5368181043451,9.71965779908924,5.60117348848283,12.1167704457959,4.70955904184208,8.9383186875719,18.4442523378983,32.9642094105239,15.2108442174239,19.7498528466783,24.1933927109028,10.5978221409158,14.1696576325585,19.1560630868582,5.53814183450038,7.81422258287326,4.56437866263838,9.36558744664736,2.85538840518309,20.8073163222174,10.3813356546012,17.2422882610378,6.12286030596793,13.729755436818,18.6397180036227,20.28945465586,31.1370759365925,13.1108294657288,7.03362610109783,12.8334280295897,17.0322794210501,18.0384425184795,9.65787460043044,4.68646859168308,16.9483173130971,7.4196497926871,5.4697480901822,28.5094038765735,16.3749688868467,5.9796223082271,21.2085629881728,25.7136881221578,37.6637768885083,40.6666954838543,50.9963308626907,29.0056750431829,26.619051125385,39.0992661517314,15.361159652764,4.53832137583659,15.7197808375678,33.2581891657287,24.0188864122573,10.8409757042041,25.224494698241,11.8710633666234,31.0935731354815,41.0866451582863,13.0802075843281,7.26862613970542,21.388422267735,13.0393704226935,19.2410727535261,18.6494547746733,17.9254400948647,13.8251932362818,17.2090943528111,15.3831600949735,13.3785045471878,33.8709640152743,42.8429844177374,12.4082554265728,10.5109283287518,19.3509897010181,9.32427219344808,17.5561811974468,14.2434344181337,17.6580027792745,15.0775876073966,19.4284397223656,10.2933363923326,2.58636007709779,6.89736526509898,10.6169317116622,11.2139327080338,24.6069435013678,28.8631351323713,19.2332413243482,13.1688842981226,15.444344270496,24.9817139927723,7.65603021748287,21.6843872238773,6.7624916413344,21.4108164506649,23.4959794949634,10.7000094036138,10.6937036839674,18.9267174921997,18.350533329216,23.5107204399263,13.8763913766838,28.4412155710815,19.064164559143,10.4129231047502,4.35145537221854,9.16336449714793,19.0449662585544,19.7157359628378,12.9409176016797,16.8724359228278,10.5979796861466,12.8933374917161,6.8417190546176,13.0545702069737,8.28373956323238,14.5193941265055,5.51556586443225,15.0041822472114,7.77095977452918,4.1458471972939,18.5145062592792,22.816036063405,17.378703496853,25.5126193852224,23.4021672895384,19.2866803638655,29.9141643907375,29.5091095879,15.8933225964782,19.507298161861,15.6256762993843,29.47782641639,18.2963196100307,24.1767707774594,17.6100120698231,25.0993966973022,22.0969997182204,18.7712753922763,23.4703572831104,21.9723936290499,25.964514193235,12.8815227898257,10.8993287383099|short_description=p1@LYSMD3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=116068 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26969 | |||
|TSSclassifier=S | |||
|UniProt=Q7Z3D4,G5E9N8,A8K613 | |||
|association_with_transcript=0bp_to_ENST00000315948,ENST00000453259,ENST00000500869,ENST00000509384,ENST00000554351,NM_198273,uc003kjr.2,uc003kjs.1,uc010jaz.1_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_LYSMD3_5end | |||
|id=chr5:89825328..89825422,- | |||
|ontology_enrichment_celltype=CL:0000738!6.03e-18!140;CL:0002031!3.37e-15!124;CL:0000037!6.11e-13!172;CL:0000566!6.11e-13!172;CL:0000766!7.22e-13!76;CL:0002057!7.52e-13!42;CL:0002087!1.58e-12!119;CL:0002032!2.08e-12!165;CL:0000837!2.08e-12!165;CL:0000860!1.96e-11!45;CL:0000988!6.14e-11!182;CL:0000839!8.90e-11!70;CL:0000134!2.29e-10!358;CL:0000557!2.84e-10!71;CL:0002320!8.90e-10!365;CL:0002009!1.19e-08!65;CL:0000763!3.34e-08!112;CL:0000049!3.34e-08!112;CL:0002194!4.45e-08!63;CL:0000576!4.45e-08!63;CL:0000040!4.45e-08!63;CL:0000559!4.45e-08!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.06e-15;33!CL:0002057;7.06e-15;33!CL:0000576;1.89e-09;48!CL:0000473;2.94e-09;39!CL:0000234;2.94e-09;39!CL:0000766;2.22e-07;69!CL:0002087;8.53e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.33e-18,136;CL:0002031,7.79e-16,120;CL:0000766,1.01e-13,72;CL:0000037,2.37e-13,168;CL:0002087,4.40e-13,115;CL:0000860,7.52e-13,42;CL:0002057,7.52e-13,42;CL:0002032,8.03e-13,161;CL:0000837,8.03e-13,161;CL:0000988,1.12e-11,177;CL:0000839,1.47e-11,66;CL:0000557,5.19e-11,67;CL:0000134,5.58e-11,354;CL:0002320,2.30e-10,361;CL:0000473,9.10e-10,48;CL:0000234,9.10e-10,48;CL:0002009,2.50e-09,61;CL:0002194,9.92e-09,59;CL:0000576,9.92e-09,59;CL:0000040,9.92e-09,59;CL:0000559,9.92e-09,59;CL:0000763,1.33e-08,108;CL:0000049,1.33e-08,108;CL:0000219,8.08e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;4.23e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.73e-14!102;UBERON:0003061!2.73e-14!102;UBERON:0002193!6.99e-13!112;UBERON:0002384!1.75e-10!375;UBERON:0004765!4.58e-10!101;UBERON:0001434!4.58e-10!101;UBERON:0001474!4.98e-10!86;UBERON:0002371!7.59e-10!80;UBERON:0002405!7.67e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.20e-15,98;UBERON:0003061,5.20e-15,98;UBERON:0002193,1.75e-13,108;UBERON:0004765,2.99e-11,90;UBERON:0002384,4.32e-11,371;UBERON:0001474,1.23e-10,82;UBERON:0002371,1.75e-10,76;UBERON:0001434,2.37e-10,100;UBERON:0002405,2.98e-09,93 | |||
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| |||
|short_description=p1@LYSMD3 | |||
}} |
Revision as of 16:51, 13 September 2013
Short description: | p1@LYSMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LYSMD3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000315948, ENST00000453259, ENST00000500869, ENST00000509384, ENST00000554351, NM_198273, uc003kjr.2, uc003kjs.1, uc010jaz.1_5end |
EntrezGene: | LYSMD3 |
HGNC: | 26969 |
UniProt: | Q7Z3D4G5E9N8A8K613 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.33e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 7.79e-16 | 120 |
myeloid leukocyte | 1.01e-13 | 72 |
hematopoietic stem cell | 2.37e-13 | 168 |
nongranular leukocyte | 4.40e-13 | 115 |
classical monocyte | 7.52e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.52e-13 | 42 |
hematopoietic oligopotent progenitor cell | 8.03e-13 | 161 |
hematopoietic multipotent progenitor cell | 8.03e-13 | 161 |
hematopoietic cell | 1.12e-11 | 177 |
myeloid lineage restricted progenitor cell | 1.47e-11 | 66 |
granulocyte monocyte progenitor cell | 5.19e-11 | 67 |
mesenchymal cell | 5.58e-11 | 354 |
connective tissue cell | 2.30e-10 | 361 |
defensive cell | 9.10e-10 | 48 |
phagocyte | 9.10e-10 | 48 |
macrophage dendritic cell progenitor | 2.50e-09 | 61 |
monopoietic cell | 9.92e-09 | 59 |
monocyte | 9.92e-09 | 59 |
monoblast | 9.92e-09 | 59 |
promonocyte | 9.92e-09 | 59 |
myeloid cell | 1.33e-08 | 108 |
common myeloid progenitor | 1.33e-08 | 108 |
motile cell | 8.08e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.20e-15 | 98 |
blood island | 5.20e-15 | 98 |
hemolymphoid system | 1.75e-13 | 108 |
skeletal element | 2.99e-11 | 90 |
connective tissue | 4.32e-11 | 371 |
bone element | 1.23e-10 | 82 |
bone marrow | 1.75e-10 | 76 |
skeletal system | 2.37e-10 | 100 |
immune system | 2.98e-09 | 93 |
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