FFCP PHASE1:Mm9::chr4:117118428..117118440,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=397|UniProt=|association_with_transcript=-114bp_to_ENSMUST00000136115_5end|description=CAGE_peak_2_at_ENSMUST00000136115_5end|id=chr4:117118428..117118440,+|ontology_enrichment_celltype=CL:0000473!6.91e-15!3;CL:0000627!6.91e-15!3;CL:0000682!6.91e-15!3;CL:0000239!1.75e-12!6;CL:0000677!1.75e-12!6;CL:0000212!1.75e-12!6;CL:0000584!1.75e-12!6;CL:0000075!1.01e-10!7;CL:0000066!2.18e-08!25;CL:0002563!2.29e-08!9;CL:0002251!2.29e-08!9|ontology_enrichment_celltype_v019_2=CL:0000682,3.10e-27,3;CL:0000239,3.64e-23,6;CL:0000677,3.64e-23,6;CL:0000584,3.64e-23,6;CL:0000075,6.31e-20,7;CL:0000066,8.13e-17,25;CL:0002563,1.34e-15,9;CL:0002251,1.34e-15,9;CL:0000473,4.43e-12,7;CL:0002076,1.65e-09,15;CL:0000223,3.32e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!8.72e-19!15;UBERON:0002465!7.68e-15!3;UBERON:0001242!3.42e-12!13;UBERON:0000060!3.42e-12!13;UBERON:0001262!3.42e-12!13;UBERON:0004786!3.42e-12!13;UBERON:0004923!2.36e-11!24;UBERON:0001962!9.58e-11!2;UBERON:0001961!9.58e-11!2;UBERON:0001744!9.58e-11!2;UBERON:0003350!2.29e-08!9;UBERON:0004808!2.29e-08!9;UBERON:0001277!2.29e-08!9;UBERON:0000331!6.86e-07!3;UBERON:0002116!6.86e-07!3;UBERON:0001204!6.86e-07!3;UBERON:0001168!6.86e-07!3;UBERON:0000485!7.32e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.11e-28,15;UBERON:0001962,3.08e-19,2;UBERON:0001961,3.08e-19,2;UBERON:0001744,3.08e-19,2;UBERON:0004923,1.34e-17,24;UBERON:0001242,1.25e-16,13;UBERON:0001262,1.25e-16,13;UBERON:0004786,1.25e-16,13;UBERON:0003350,1.34e-15,9;UBERON:0004808,1.34e-15,9;UBERON:0001277,1.34e-15,9;UBERON:0002465,3.66e-13,3;UBERON:0000485,7.75e-13,11;UBERON:0003199,2.01e-10,1;UBERON:0000160,4.98e-07,31|phase1_expression=0,1.39590163055744,4.09499315450582,0,0,1.84667199103079,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0795226359846,8.48814339948529,4.01962374880514,6.46142994238612,4.30942465371778,0.190023419456374,0,3.76941868114018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0.147689527174577,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@ENSMUST00000136115}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=397 | |||
|UniProt= | |||
|association_with_transcript=-114bp_to_ENSMUST00000136115_5end | |||
|description=CAGE_peak_2_at_ENSMUST00000136115_5end | |||
|id=chr4:117118428..117118440,+ | |||
|ontology_enrichment_celltype=CL:0000473!6.91e-15!3;CL:0000627!6.91e-15!3;CL:0000682!6.91e-15!3;CL:0000239!1.75e-12!6;CL:0000677!1.75e-12!6;CL:0000212!1.75e-12!6;CL:0000584!1.75e-12!6;CL:0000075!1.01e-10!7;CL:0000066!2.18e-08!25;CL:0002563!2.29e-08!9;CL:0002251!2.29e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,3.10e-27,3;CL:0000239,3.64e-23,6;CL:0000677,3.64e-23,6;CL:0000584,3.64e-23,6;CL:0000075,6.31e-20,7;CL:0000066,8.13e-17,25;CL:0002563,1.34e-15,9;CL:0002251,1.34e-15,9;CL:0000473,4.43e-12,7;CL:0002076,1.65e-09,15;CL:0000223,3.32e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!8.72e-19!15;UBERON:0002465!7.68e-15!3;UBERON:0001242!3.42e-12!13;UBERON:0000060!3.42e-12!13;UBERON:0001262!3.42e-12!13;UBERON:0004786!3.42e-12!13;UBERON:0004923!2.36e-11!24;UBERON:0001962!9.58e-11!2;UBERON:0001961!9.58e-11!2;UBERON:0001744!9.58e-11!2;UBERON:0003350!2.29e-08!9;UBERON:0004808!2.29e-08!9;UBERON:0001277!2.29e-08!9;UBERON:0000331!6.86e-07!3;UBERON:0002116!6.86e-07!3;UBERON:0001204!6.86e-07!3;UBERON:0001168!6.86e-07!3;UBERON:0000485!7.32e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.11e-28,15;UBERON:0001962,3.08e-19,2;UBERON:0001961,3.08e-19,2;UBERON:0001744,3.08e-19,2;UBERON:0004923,1.34e-17,24;UBERON:0001242,1.25e-16,13;UBERON:0001262,1.25e-16,13;UBERON:0004786,1.25e-16,13;UBERON:0003350,1.34e-15,9;UBERON:0004808,1.34e-15,9;UBERON:0001277,1.34e-15,9;UBERON:0002465,3.66e-13,3;UBERON:0000485,7.75e-13,11;UBERON:0003199,2.01e-10,1;UBERON:0000160,4.98e-07,31 | |||
|phase1_expression=0,1.39590163055744,4.09499315450582,0,0,1.84667199103079,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0795226359846,8.48814339948529,4.01962374880514,6.46142994238612,4.30942465371778,0.190023419456374,0,3.76941868114018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0.147689527174577,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@ENSMUST00000136115 | |||
}} |
Revision as of 03:33, 14 September 2013
Short description: | p2@ENSMUST00000136115 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ENSMUST00000136115_5end |
Coexpression cluster: | MCL_coexpression_mm9:397 |
Association with transcript: | -114bp_to_ENSMUST00000136115_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 3.10e-27 | 3 |
brush border epithelial cell | 3.64e-23 | 6 |
gut absorptive cell | 3.64e-23 | 6 |
enterocyte | 3.64e-23 | 6 |
columnar/cuboidal epithelial cell | 6.31e-20 | 7 |
epithelial cell | 8.13e-17 | 25 |
intestinal epithelial cell | 1.34e-15 | 9 |
epithelial cell of alimentary canal | 1.34e-15 | 9 |
defensive cell | 4.43e-12 | 7 |
endo-epithelial cell | 1.65e-09 | 15 |
endodermal cell | 3.32e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.11e-28 | 15 |
gut-associated lymphoid tissue | 3.08e-19 | 2 |
mucosa-associated lymphoid tissue | 3.08e-19 | 2 |
lymphoid tissue | 3.08e-19 | 2 |
organ component layer | 1.34e-17 | 24 |
intestinal mucosa | 1.25e-16 | 13 |
wall of intestine | 1.25e-16 | 13 |
gastrointestinal system mucosa | 1.25e-16 | 13 |
epithelium of mucosa | 1.34e-15 | 9 |
gastrointestinal system epithelium | 1.34e-15 | 9 |
intestinal epithelium | 1.34e-15 | 9 |
lymphoid system | 3.66e-13 | 3 |
simple columnar epithelium | 7.75e-13 | 11 |
egg chamber | 2.01e-10 | 1 |
intestine | 4.98e-07 | 31 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.