FFCP PHASE1:Mm9::chr6:78322134..78322178,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=448|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78322134..78322178,+|id=chr6:78322134..78322178,+|ontology_enrichment_celltype=CL:0000239!3.17e-18!6;CL:0000677!3.17e-18!6;CL:0000212!3.17e-18!6;CL:0000584!3.17e-18!6;CL:0002563!8.64e-16!9;CL:0002251!8.64e-16!9;CL:0000075!1.55e-15!7;CL:0000066!9.69e-11!25;CL:0000473!1.19e-10!3;CL:0000627!1.19e-10!3;CL:0000682!1.19e-10!3;CL:0002076!4.23e-09!15|ontology_enrichment_celltype_v019_2=CL:0000239,1.86e-19,6;CL:0000677,1.86e-19,6;CL:0000584,1.86e-19,6;CL:0000075,1.14e-16,7;CL:0000682,2.14e-15,3;CL:0002563,6.08e-13,9;CL:0002251,6.08e-13,9;CL:0000066,2.91e-11,25;CL:0002076,1.06e-07,15;CL:0000473,7.24e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.10e-32!15;UBERON:0001242!3.05e-27!13;UBERON:0000060!3.05e-27!13;UBERON:0001262!3.05e-27!13;UBERON:0004786!3.05e-27!13;UBERON:0000160!3.10e-27!43;UBERON:0004923!3.03e-19!24;UBERON:0005409!1.15e-18!59;UBERON:0003350!8.64e-16!9;UBERON:0004808!8.64e-16!9;UBERON:0001277!8.64e-16!9;UBERON:0000485!9.46e-13!11;UBERON:0000331!7.13e-11!3;UBERON:0002116!7.13e-11!3;UBERON:0001204!7.13e-11!3;UBERON:0001168!7.13e-11!3;UBERON:0001007!5.48e-08!128;UBERON:0001555!5.48e-08!128;UBERON:0007026!5.48e-08!128;UBERON:0004119!8.60e-08!130;UBERON:0000925!8.60e-08!130;UBERON:0006595!8.60e-08!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.46e-30,15;UBERON:0001242,1.77e-28,13;UBERON:0001262,1.77e-28,13;UBERON:0004786,1.77e-28,13;UBERON:0000160,1.40e-23,31;UBERON:0004923,2.39e-18,24;UBERON:0000331,9.88e-16,3;UBERON:0002116,9.88e-16,3;UBERON:0001204,9.88e-16,3;UBERON:0001168,9.88e-16,3;UBERON:0005409,7.02e-15,47;UBERON:0003350,6.08e-13,9;UBERON:0004808,6.08e-13,9;UBERON:0001277,6.08e-13,9;UBERON:0002108,6.26e-12,4;UBERON:0000485,1.45e-10,11|phase1_expression=0,10.1202868215415,14.5599756604652,3.32710632437513,2.50447864973174,0.16787927191189,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,2.98232065387321,24.1177424928308,15.0766698655676,6.89507944594845,40.665011763664,13.3575968772763,37.9159173220571,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65209391491899,6.61126416658861,0,0,0,0,0,0,3.32170343081158,0.329397909448022,0,0,0,1.79763881730844,0.648414149624083,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632073515871632,8.4334886859999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:78322134..78322178,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=448 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78322134..78322178,+ | |||
|id=chr6:78322134..78322178,+ | |||
|ontology_enrichment_celltype=CL:0000239!3.17e-18!6;CL:0000677!3.17e-18!6;CL:0000212!3.17e-18!6;CL:0000584!3.17e-18!6;CL:0002563!8.64e-16!9;CL:0002251!8.64e-16!9;CL:0000075!1.55e-15!7;CL:0000066!9.69e-11!25;CL:0000473!1.19e-10!3;CL:0000627!1.19e-10!3;CL:0000682!1.19e-10!3;CL:0002076!4.23e-09!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.86e-19,6;CL:0000677,1.86e-19,6;CL:0000584,1.86e-19,6;CL:0000075,1.14e-16,7;CL:0000682,2.14e-15,3;CL:0002563,6.08e-13,9;CL:0002251,6.08e-13,9;CL:0000066,2.91e-11,25;CL:0002076,1.06e-07,15;CL:0000473,7.24e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.10e-32!15;UBERON:0001242!3.05e-27!13;UBERON:0000060!3.05e-27!13;UBERON:0001262!3.05e-27!13;UBERON:0004786!3.05e-27!13;UBERON:0000160!3.10e-27!43;UBERON:0004923!3.03e-19!24;UBERON:0005409!1.15e-18!59;UBERON:0003350!8.64e-16!9;UBERON:0004808!8.64e-16!9;UBERON:0001277!8.64e-16!9;UBERON:0000485!9.46e-13!11;UBERON:0000331!7.13e-11!3;UBERON:0002116!7.13e-11!3;UBERON:0001204!7.13e-11!3;UBERON:0001168!7.13e-11!3;UBERON:0001007!5.48e-08!128;UBERON:0001555!5.48e-08!128;UBERON:0007026!5.48e-08!128;UBERON:0004119!8.60e-08!130;UBERON:0000925!8.60e-08!130;UBERON:0006595!8.60e-08!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.46e-30,15;UBERON:0001242,1.77e-28,13;UBERON:0001262,1.77e-28,13;UBERON:0004786,1.77e-28,13;UBERON:0000160,1.40e-23,31;UBERON:0004923,2.39e-18,24;UBERON:0000331,9.88e-16,3;UBERON:0002116,9.88e-16,3;UBERON:0001204,9.88e-16,3;UBERON:0001168,9.88e-16,3;UBERON:0005409,7.02e-15,47;UBERON:0003350,6.08e-13,9;UBERON:0004808,6.08e-13,9;UBERON:0001277,6.08e-13,9;UBERON:0002108,6.26e-12,4;UBERON:0000485,1.45e-10,11 | |||
|phase1_expression=0,10.1202868215415,14.5599756604652,3.32710632437513,2.50447864973174,0.16787927191189,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,2.98232065387321,24.1177424928308,15.0766698655676,6.89507944594845,40.665011763664,13.3575968772763,37.9159173220571,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65209391491899,6.61126416658861,0,0,0,0,0,0,3.32170343081158,0.329397909448022,0,0,0,1.79763881730844,0.648414149624083,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632073515871632,8.4334886859999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:78322134..78322178,+ | |||
}} |
Revision as of 10:39, 14 September 2013
Short description: | p@chr6:78322134..78322178, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78322134..78322178, + |
Coexpression cluster: | MCL_coexpression_mm9:448 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.86e-19 | 6 |
gut absorptive cell | 1.86e-19 | 6 |
enterocyte | 1.86e-19 | 6 |
columnar/cuboidal epithelial cell | 1.14e-16 | 7 |
M cell of gut | 2.14e-15 | 3 |
intestinal epithelial cell | 6.08e-13 | 9 |
epithelial cell of alimentary canal | 6.08e-13 | 9 |
epithelial cell | 2.91e-11 | 25 |
endo-epithelial cell | 1.06e-07 | 15 |
defensive cell | 7.24e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.46e-30 | 15 |
intestinal mucosa | 1.77e-28 | 13 |
wall of intestine | 1.77e-28 | 13 |
gastrointestinal system mucosa | 1.77e-28 | 13 |
intestine | 1.40e-23 | 31 |
organ component layer | 2.39e-18 | 24 |
ileal mucosa | 9.88e-16 | 3 |
ileum | 9.88e-16 | 3 |
mucosa of small intestine | 9.88e-16 | 3 |
wall of small intestine | 9.88e-16 | 3 |
gastrointestinal system | 7.02e-15 | 47 |
epithelium of mucosa | 6.08e-13 | 9 |
gastrointestinal system epithelium | 6.08e-13 | 9 |
intestinal epithelium | 6.08e-13 | 9 |
small intestine | 6.26e-12 | 4 |
simple columnar epithelium | 1.45e-10 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.