FFCP PHASE1:Mm9::chr6:78322817..78322858,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=448|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78322817..78322858,+|id=chr6:78322817..78322858,+|ontology_enrichment_celltype=CL:0000239!2.13e-19!6;CL:0000677!2.13e-19!6;CL:0000212!2.13e-19!6;CL:0000584!2.13e-19!6;CL:0002563!7.45e-17!9;CL:0002251!7.45e-17!9;CL:0000075!1.51e-16!7;CL:0000066!1.46e-11!25;CL:0000473!3.07e-11!3;CL:0000627!3.07e-11!3;CL:0000682!3.07e-11!3;CL:0002076!9.39e-10!15;CL:0000223!4.34e-07!20|ontology_enrichment_celltype_v019_2=CL:0000239,2.52e-20,6;CL:0000677,2.52e-20,6;CL:0000584,2.52e-20,6;CL:0000075,2.04e-17,7;CL:0000682,4.11e-16,3;CL:0002563,1.57e-13,9;CL:0002251,1.57e-13,9;CL:0000066,7.31e-12,25;CL:0002076,4.56e-08,15;CL:0000473,3.48e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.03e-34!15;UBERON:0000160!4.19e-32!43;UBERON:0001242!6.61e-29!13;UBERON:0000060!6.61e-29!13;UBERON:0001262!6.61e-29!13;UBERON:0004786!6.61e-29!13;UBERON:0005409!2.98e-22!59;UBERON:0004923!9.97e-21!24;UBERON:0003350!7.45e-17!9;UBERON:0004808!7.45e-17!9;UBERON:0001277!7.45e-17!9;UBERON:0000485!1.25e-13!11;UBERON:0000331!1.79e-11!3;UBERON:0002116!1.79e-11!3;UBERON:0001204!1.79e-11!3;UBERON:0001168!1.79e-11!3;UBERON:0001007!4.93e-10!128;UBERON:0001555!4.93e-10!128;UBERON:0007026!4.93e-10!128;UBERON:0004119!8.29e-10!130;UBERON:0000925!8.29e-10!130;UBERON:0006595!8.29e-10!130;UBERON:0002108!2.31e-09!16;UBERON:0004921!4.06e-08!126;UBERON:0004185!4.06e-08!126;UBERON:0001962!2.27e-07!2;UBERON:0001961!2.27e-07!2;UBERON:0001744!2.27e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.16e-31,15;UBERON:0001242,7.25e-24,13;UBERON:0001262,7.25e-24,13;UBERON:0004786,7.25e-24,13;UBERON:0004923,2.67e-19,24;UBERON:0000160,6.30e-18,31;UBERON:0000331,1.82e-16,3;UBERON:0002116,1.82e-16,3;UBERON:0001204,1.82e-16,3;UBERON:0001168,1.82e-16,3;UBERON:0003350,1.57e-13,9;UBERON:0004808,1.57e-13,9;UBERON:0001277,1.57e-13,9;UBERON:0002108,1.74e-12,4;UBERON:0005409,2.79e-11,47;UBERON:0000485,4.72e-11,11;UBERON:0001962,2.65e-10,2;UBERON:0001961,2.65e-10,2;UBERON:0001744,2.65e-10,2;UBERON:0002465,3.72e-07,3|phase1_expression=0,7.32848356042658,9.55498402718026,3.0246421130683,3.50627010962443,0.33575854382378,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75991665072747,2.75291137280604,27.563134277521,13.7843838770904,8.40337807474967,31.1638407908453,9.57714493087737,38.1376478327124,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29911349687732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,15.6025834331491,0,0,0,0,0,0,2.84717436926707,0.164698954724011,0.251335208800269,0,0,0.898819408654221,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0,0,0,0,0.363533729477506,0,0,5.27093042874994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:78322817..78322858,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=448 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78322817..78322858,+ | |||
|id=chr6:78322817..78322858,+ | |||
|ontology_enrichment_celltype=CL:0000239!2.13e-19!6;CL:0000677!2.13e-19!6;CL:0000212!2.13e-19!6;CL:0000584!2.13e-19!6;CL:0002563!7.45e-17!9;CL:0002251!7.45e-17!9;CL:0000075!1.51e-16!7;CL:0000066!1.46e-11!25;CL:0000473!3.07e-11!3;CL:0000627!3.07e-11!3;CL:0000682!3.07e-11!3;CL:0002076!9.39e-10!15;CL:0000223!4.34e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.52e-20,6;CL:0000677,2.52e-20,6;CL:0000584,2.52e-20,6;CL:0000075,2.04e-17,7;CL:0000682,4.11e-16,3;CL:0002563,1.57e-13,9;CL:0002251,1.57e-13,9;CL:0000066,7.31e-12,25;CL:0002076,4.56e-08,15;CL:0000473,3.48e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.03e-34!15;UBERON:0000160!4.19e-32!43;UBERON:0001242!6.61e-29!13;UBERON:0000060!6.61e-29!13;UBERON:0001262!6.61e-29!13;UBERON:0004786!6.61e-29!13;UBERON:0005409!2.98e-22!59;UBERON:0004923!9.97e-21!24;UBERON:0003350!7.45e-17!9;UBERON:0004808!7.45e-17!9;UBERON:0001277!7.45e-17!9;UBERON:0000485!1.25e-13!11;UBERON:0000331!1.79e-11!3;UBERON:0002116!1.79e-11!3;UBERON:0001204!1.79e-11!3;UBERON:0001168!1.79e-11!3;UBERON:0001007!4.93e-10!128;UBERON:0001555!4.93e-10!128;UBERON:0007026!4.93e-10!128;UBERON:0004119!8.29e-10!130;UBERON:0000925!8.29e-10!130;UBERON:0006595!8.29e-10!130;UBERON:0002108!2.31e-09!16;UBERON:0004921!4.06e-08!126;UBERON:0004185!4.06e-08!126;UBERON:0001962!2.27e-07!2;UBERON:0001961!2.27e-07!2;UBERON:0001744!2.27e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.16e-31,15;UBERON:0001242,7.25e-24,13;UBERON:0001262,7.25e-24,13;UBERON:0004786,7.25e-24,13;UBERON:0004923,2.67e-19,24;UBERON:0000160,6.30e-18,31;UBERON:0000331,1.82e-16,3;UBERON:0002116,1.82e-16,3;UBERON:0001204,1.82e-16,3;UBERON:0001168,1.82e-16,3;UBERON:0003350,1.57e-13,9;UBERON:0004808,1.57e-13,9;UBERON:0001277,1.57e-13,9;UBERON:0002108,1.74e-12,4;UBERON:0005409,2.79e-11,47;UBERON:0000485,4.72e-11,11;UBERON:0001962,2.65e-10,2;UBERON:0001961,2.65e-10,2;UBERON:0001744,2.65e-10,2;UBERON:0002465,3.72e-07,3 | |||
|phase1_expression=0,7.32848356042658,9.55498402718026,3.0246421130683,3.50627010962443,0.33575854382378,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75991665072747,2.75291137280604,27.563134277521,13.7843838770904,8.40337807474967,31.1638407908453,9.57714493087737,38.1376478327124,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29911349687732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,15.6025834331491,0,0,0,0,0,0,2.84717436926707,0.164698954724011,0.251335208800269,0,0,0.898819408654221,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0,0,0,0,0.363533729477506,0,0,5.27093042874994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:78322817..78322858,+ | |||
}} |
Revision as of 10:39, 14 September 2013
Short description: | p@chr6:78322817..78322858, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78322817..78322858, + |
Coexpression cluster: | MCL_coexpression_mm9:448 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.52e-20 | 6 |
gut absorptive cell | 2.52e-20 | 6 |
enterocyte | 2.52e-20 | 6 |
columnar/cuboidal epithelial cell | 2.04e-17 | 7 |
M cell of gut | 4.11e-16 | 3 |
intestinal epithelial cell | 1.57e-13 | 9 |
epithelial cell of alimentary canal | 1.57e-13 | 9 |
epithelial cell | 7.31e-12 | 25 |
endo-epithelial cell | 4.56e-08 | 15 |
defensive cell | 3.48e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.16e-31 | 15 |
intestinal mucosa | 7.25e-24 | 13 |
wall of intestine | 7.25e-24 | 13 |
gastrointestinal system mucosa | 7.25e-24 | 13 |
organ component layer | 2.67e-19 | 24 |
intestine | 6.30e-18 | 31 |
ileal mucosa | 1.82e-16 | 3 |
ileum | 1.82e-16 | 3 |
mucosa of small intestine | 1.82e-16 | 3 |
wall of small intestine | 1.82e-16 | 3 |
epithelium of mucosa | 1.57e-13 | 9 |
gastrointestinal system epithelium | 1.57e-13 | 9 |
intestinal epithelium | 1.57e-13 | 9 |
small intestine | 1.74e-12 | 4 |
gastrointestinal system | 2.79e-11 | 47 |
simple columnar epithelium | 4.72e-11 | 11 |
gut-associated lymphoid tissue | 2.65e-10 | 2 |
mucosa-associated lymphoid tissue | 2.65e-10 | 2 |
lymphoid tissue | 2.65e-10 | 2 |
lymphoid system | 3.72e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.