Coexpression cluster:C1640: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0.134609515403383,0.154789347353621,0,0,0.160456854061196,0,-0.137495989096178,0,0,-0.0807631791706342,-0.137495989096178,-0.0516913520653119,-0.0358289858768241,0,0,0,0,-0.0846597124119318,0,-0.125761904734689,-0.0568692528359348,-0.111420272902821,0,-0.0711046699433747,0,0,-0.137495989096178,0,0.00656868277893749,0,0.0625128387853364,0,-0.137495989096178,-0.137495989096178,-0.10509193051751,0.108679489543122,-0.0256958347019554,0.925349083167687,0.79799457685596,0.95186380329964,0.0877514257027229,0.121853104351623,0.180455955570557,0.167379475100975,0,0.252644721767058,0.165795549095301,0.349361419812377,0.365097517181656,0.378812999405891,0.375457529275039,0.138393286846817,0.356975776959145,0.511599746163713,0.393013290264985,0.0749050231308192,0.189156758681335,0.157584289006658,0.471119774111733,0.278252572994566,0.546992346570292,0,0.145795150225341,0.130250388576741,0.271987364718628,0.338298299426347,0.210270953277894,0.585267592786385,0.537458566384958,0.234274120971535,0.542960147736103,0.0635001359087241,0.286025931074262,0,0.0837191039350518,0.126999435206801,0.0475596592132095,0.105761500098292,0.0781157608809602,0.195906702716978,0.241340843531679,0.135237094603344,-0.137495989096178,-0.133535227000333,-0.137495989096178,0,0,-0.137495989096178,-0.137495989096178,0,-0.127101764014575,0.014570642043957,0,0,0,-0.137495989096178,0.114589453383103,0,0,0.0848942438073842,-0.0266085705474738,-0.137495989096178,-0.137495989096178,-0.050133131288294,-0.0253584046609292,0,-0.0334174625056928,0.13017876249911,0.100411454806203,0.0433309856669518,0,0,-0.0163628001602216,0,-0.137495989096178,-0.0487864129757578,0,0.0509922208290499,0,-0.0173943089862236,-0.137495989096178,-0.137495989096178,-0.137495989096178,-0.0851920443568902,0,-0.00782227066417332,0,0.00962776100106999,0.0459124067287615,0.0587388785772559,1.03150034932649,0.0854027069910967,-0.0852398081275374,0.133998235926338,0,0.251397944837589,-0.0686500214357074,0.0681346137405191,0.10843121454309,0.213651474548433,0.0583958126722925,0.0637388152573225,-0.137495989096178,-0.000526822176410813,0.293233564865636,0.173150264794125,0.145778561516109,-0.00681349325495725,-0.126332517101525,-0.137495989096178,0,-0.137495989096178,-0.137495989096178,-0.128183864076335,0,0,-0.137495989096178,0.345701233562971,0.20817659866207,0.0463826589496585,0,0,0,0.101885124887206,0.0815241578437886,0.135898649677801,0.335065535296785,0.161501541312569,0,-0.137495989096178,-0.00191702717632683,0.557402094441909,0.55072823544883,-0.137495989096178,0.39635905700697,-0.0857144803753251,0.137525544573964,0.194406136156248,-0.005662994555621,0,-0.00734024413873485,0,0,0,0,0,0.156724792818163,-0.137495989096178,0.0291363384018771,-0.137495989096178,0.060489586087507,-0.127966399667323,-0.137495989096178,-0.137495989096178,0.148697751957957,0,0.0427037663627782,0,-0.0802290675327901,-0.137495989096178,-0.0876042608959892,0,-0.137495989096178,-0.137495989096178,0,0,-0.0767082557252136,-0.0873919221343111,0.0716573069394021,0.084060318828564,-0.0540177717259134,0.0197109539225214,-0.0151752493438796,0.248689536111648,0,0.328158989529812,0,0.224280893206885,0.0368049475395479,0.121655724261186,0.305774504562574,0,-0.108165748355544,0,-0.0714466929515178,-0.0279833859270764,0,-0.0834463629165206,-0.046311171403366,0,-0.0397803775436606,-0.137495989096178,-0.137495989096178,0.0395127710947566,-0.137495989096178,0.318485950643912,0,0.0485609657022036,-0.0989403217036357,-0.0824128334590211,0,0.0195855244014594,0,0.151159868861518,0.0778115911724362,0.141370482160471,-0.137495989096178,-0.137495989096178,-0.137495989096178,-0.137495989096178,0.818254171066823,0.83865791503906,0.928241220133825,-0.137495989096178,-0.04198600636134,0,0.0205651493889805,-0.137495989096178,-0.137495989096178,0.0277311863012537,-0.104874410803825,0,0,0,-0.00644668043153415,-0.0789308730683654,0,0.058614523414842,0,-0.137495989096178,0.25648297057773,-0.137495989096178,0,0,-0.0503936361208124,-0.137495989096178,0,-0.137495989096178,-0.137495989096178,-0.0249517185492332,0.0209395337495714,0,0.235679859774857,0,-0.0617688938484782,-0.0356840691599635,-0.137495989096178,0,-0.0265660651000731,-0.137495989096178,0.154451231545812,-0.0913400095365919,-0.137495989096178,-0.137495989096178,0.26925883118562,-0.137495989096178,-0.137495989096178,-0.00812604752445945,-0.0131376532730395,0,0,-0.0736099671298095,0.0580378687812504,-0.13452424317215,0,0,0.132064901528981,-0.137495989096178,0,0,0,0,-0.137495989096178,0,-0.0828981992924887,0,0,0,0.130747028455384,0,0,0.120209572293234,0.0939102081122098,0.179945736151673,0,0,0,-0.137495989096178,-0.108485994895194,0.278844880248025,0.822717627677973,0.150577011075896,0,0,-0.0332598906805479,0.856213910370968,0.69661250763728,0.601663069575481,0.130791706039133,-0.0433817687566239,-0.137495989096178,-0.137495989096178,-0.101571454919168,-0.0398680432970871,0.0361830415099865,-0.137495989096178,0,0.261755686906388,0.36179812779274,0.0482268119732695,-0.137495989096178,-0.137495989096178,-0.0614473241311118,0,0.547836189393687,0.127788988067487,0.141267064055509,0.16858886837201,0.121135466870588,0,-0.113903757431287,-0.137330695864244,0.0342782958079773,0,-0.0119006501844577,-0.00313450533112844,-0.0581314840038894,0.171073339962802,-0.0476459693452962,-0.137495989096178,0.0156966933922078,0,0.011080439994948,-0.137495989096178,-0.137495989096178,0,-0.137495989096178,-0.0555019499959944,-0.00480810838558382,-0.137495989096178,0,-0.137495989096178,-0.137495989096178,-0.0600772803418358,-0.0497590125579751,-0.090092192614923,0,0,-0.0142931245223923,-0.137495989096178,0.451911614733887,-0.137495989096178,-0.0414455132393162,-0.125705664329706,-0.137495989096178,0,-0.0607312681340824,0.0622241049201175,0.0620189823948138,0.0145202765003052,0.466527075086353,0.325589505693003,-0.0220284038082151,-0.00519526048768243,-0.0134583170472607,0,0.403352635015532,0.078162832408126,-0.137495989096178,0.112605410653928,-0.137495989096178,-0.137495989096178,-0.137495989096178,0,-0.137495989096178,0,0,0.371713596372483,0.433877273777048,-0.137495989096178,0.0923609430634564,-0.0562060975410985,-0.137495989096178,0.450942167666969,0.260932224442006,0.0560130934953836,-0.137495989096178,-0.137495989096178,-0.137495989096178,-0.137495989096178,0,-0.00965462904219788,0,0.0571908507667298,0,0,-0.101776779797805,-0.137495989096178,-0.124463265144555,0.226452298536161,-0.0282585244527651,-0.0589756975450669,-0.137495989096178,-0.0279772742052524,-0.0982764681258193,-0.0437139167415808,0,0.213072052700123,0.0435505116359307,-0.137495989096178,-0.137495989096178,-0.099750400104353,-0.137495989096178,-0.137495989096178,0.336285736409286,-0.0206989816451469,0,0,0.0898074372339897,0,0.0704669571226484,0.0583060570185165,0.382586018209489,0.172911571398854,0.0795859312058276,0.187529586342753,0.253610608288505,0,0.266879997726839,0.0951833797824107,0.0740126088844155,-0.0789677758669745,-0.0287391018828651,-0.0732528517884615,-0.137495989096178,-0.075787671111869,0.0719682667007019,0,0,0.154463363576548,-0.137495989096178,0.99385713734691,-0.137495989096178,-0.137495989096178,-0.0963563810415448,-0.0552147910555226,-0.0956658183650237,-0.137495989096178,-0.137495989096178,-0.0704812780012139,-0.137495989096178,-0.0695196155630557,0,0,-0.137495989096178,0,0.0560241997108623,0.0628161527151961,-0.00265564936349938,0.0742568255251144,-0.0675774039210377,0.0183980217107111,-0.0632603254439966,0.107447869568018,0.299757310563537,0.121503312651168,0.171023582748077,0.0662528064680222,0.0831891152636857,0.424060927944013,0.147091613585337,0.354043816561468,0.16843265655462,0.0504125515893149,0.319816188571579,-0.00412527320288034,0.0715216048933879,0.0419329558267078,0.296987167840324,0.208034496695047,0.187068337098254,0,0.0159909475397085,-0.137495989096178,0.553268415682729,0.0700082966122911,0.236788992518656,0,0.178547416331584,0.0607312085627638,0.308400080382935,0.48654369526914,-0.137495989096178,0.0992936576014187,0.0658782268308266,-0.137495989096178,0.111471046606167,0.201396666864967,0.157991613466995,-0.0260206099901072,0.186523720621229,0.116541676402577,0.07188629824861,0.090104171961993,0.10355501898227,-0.05210024231495,0.120245177400006,-0.0994334195675783,0.00936353178210947,0,-0.0741700412177682,0.0381998952958687,-0.0878412602919258,0,-0.137495989096178,0.139245386617749,0,0.179069204936222,0.0829665976899861,-0.137495989096178,0,0.152963619298822,0.118945920329174,0.79846760790646,0.339666947901016,-0.000556169092426562,0.0140846123257937,0.0222410105436803,0.301530481552365,0,-0.137495989096178,0.148015704445356,0.2376294673039,0.551387624426412,0.0215903762888127,-0.0602211026423764,0.2661696479516,-0.0233365993514949,-0.137495989096178,0,0,0.0305037848800883,0,0.268069586889531,0.191646233196681,0,0.0405993330353711,0.0450200171788652,0.31140628842589,0.343192323807067,-0.0973858389428545,-0.137495989096178,-0.0141469091114162,0.0769963366386578,-0.00911179920349103,0,0.189818001971091,0,0,0.332347565084029,0.017245515339409,0.181883109219556,0.300823232683244,0,0.0263051362989661,0.0928513886383072,0.0584468268118252,0.696616239786611,0.38276680680231,0.320432579928289,0.177003165440564,0.178974384137559,0,0.60228809274976,0.739486662189752,-0.137495989096178,0.258230598142414,0.00730193679043661,0.58331323522274,0.624101112704059,1.60725334923047,0.342042309812173,0.470588445469947,0.18799038245806,0.0797419986649781,0.447390536536058,0,-0.137495989096178,-0.103101842649091,-0.109167348738257,0.11473058805483,-0.108245193855259,0.483775739621954,0.221445242480346,-0.137495989096178,-0.137495989096178,-0.137495989096178,0.161352362291136,0.836042146328812,0,0,0.168153873077708,-0.0186602324646277,0.00793535756772107,0.123267595878597,0,0.234186964128339,0.19008202113688,0.194203210606705,0,-0.0522861424897265,0,0.165701259429389,0.0640693205985888,0.425441333271206,-0.013848631564633,-0.0179295318537076,0.190247350157193,0.753149279662723,0.678995158791965,0.127808716688197,0,0.328209997934909,0,0.311118956291706,0.0374837985206637,0.298429085280607,-0.0875834189004287,0,0.492332086577509,0.523340433061432,0.676366457941334,0.555744661898396,0.118631122812508,0,0.0948387187168004,0.138483577189796,0.85513741814521,0.585672374515704,0.0741905798248643,0.124976888290026,0.0511449590802371,-0.0761758099460514,0.196157017907754,0.0917604244830311,0.166825123124581,-0.0656519412556655,-0.0770796616963165,0,0.0154876943138771,0.0687345393518314,0.0974544165143517,0.276418423478184,0,0.107066761165537,0,-0.11630138782809,0.0641946247847473,0.430567052342566,-0.0748151410391237,0.150666259251702,0.102379403318181,0.505824413960612,0.166640845178331,0.330903729395183,0.121079393013951,0.0998955777764458,0.067314367330795,0.202591088476742,0.35382867007675,0.0922082455951958,0,0,0.409502686483542,0.407075271633505,0.111071389010678,-0.137495989096178,-0.137495989096178,-0.137495989096178,0.035536765234318,-0.137495989096178,-0.0206222225628809,0.0433573216026874,0,-0.137495989096178,-0.108395348109115,-0.0771153322356537,-0.137495989096178,-0.0609575273184009,0.236753160450522,0,0.0188058769089611,0,0.363694581123589,0.459021376493629,0,0.0791766844314576,-0.0934693246196846,-0.1071812080037,0,0.157965479322133,0.0568589461625992,0,-0.085227559757333,-0.0204580325368975,0.118771124297205,-0.0516992278218759,-0.108101907215463,0.129746084715859,0.133776330280784,-0.130036464965281,0.213785609188296,-0.104530195228962,-0.137495989096178,0,0.14551933271402,-0.038189423340902,0.207082023687301,0.667549084871821,0.0117948004066552,-0.137495989096178,-0.10845440282578,0,0.903654190112026,0.0778384462202319,0.13158952973156,0.322337487636881,0.0474795670351238,0.388439089062926,0,0,-0.0766393178918302,0.282044380711351,0,0.11431739393173,0.309893256862857,-0.0142208177534274,-0.0573701838162345,0.408605602194887,0.261678447012981,-0.0393150971902562,-0.137495989096178,0,0.650645330025883,0.130893964993104,0.195693922925446,0.316264741738924,0,0.0298181062439639,0,0.0709257799838506,-0.0472395890906606,0,0.0553551885028491,-0.0140154961032242,0.0921546695012139,0.159845487885454,0.0139895538870801,0.118671766513265,0.290903349028307,0.128437285714536,0.155899095731056,1.04823595388588,0.0843723556258797,0.0365461682413782,0.0907808850426298,0.069615664822552,0.532134219103551,0.568789105972913,0.228040620608018,0.711601246265009,0.0934306291108585,0.388316325584579,0.241956092438811,0.49372778063899,0.39775968088621,-0.0201562773371372,-0.137495989096178,0.113652436668683,-0.00479286574925181,0.172507101478514,1.08549525837167,0.149419651083819,0,0.214240186075198,-0.0848946209865084,-0.0973871220949678,-0.0324460928333942,-0.04904372006033,0.0527523680160372,0.0680426695759959,0.0956265830746163,0,0.111755293710433,0.171286269818672,-0.0455911851659155,0.636500131601164,0.877309178195751,0.107069183029817,0.226819429614072,0,-0.0150039811164547,-0.0961265369749214,0.62447226108198,0.131264050546165,0.146502246630657,0.556485880743021,0,0.772404288407713,0.076387346730294,-0.108928196869794,-0.0189279874475097,0.184415109078388,0.149324120984657,0.454647098925123,0.156132999089005,0.126863095863238,-0.0924604550022107,-0.137495989096178,0.0698509914909976,0.0794824852451976,0.135952613269937,-0.0403402213057012,0.0317229404497622,0,0.635149629564883,0.301129277361898,0.267860402174185,0.169124272131648,-0.137495989096178,0,0.125935033097091,0.0267975841371139,0.534712088023823,0.354636493550993,0,0.0283076897745917,0.017941240056933,0.367475461590747,0,0.139209453962182,0.466974746384346,0.198508723569696,0.348390599711988,0.0500863030838633,0.346487650381282,0.0454231131964298,0.0590381034890415,0|full_id=C1640_heart_Cardiac_skeletal_acute_Hepatocyte_renal_CD14|id=C1640|ontology_enrichment_celltype=CL:0000860!3.97e-12!42;CL:0002057!3.97e-12!42;CL:0000766!7.29e-10!72;CL:0000473!8.39e-10!48;CL:0000234!8.39e-10!48;CL:0002009!1.50e-09!61;CL:0002194!7.02e-09!59;CL:0000576!7.02e-09!59;CL:0000040!7.02e-09!59;CL:0000559!7.02e-09!59;CL:0000557!2.00e-08!67;CL:0000839!9.39e-08!66|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0007023!2.89e-12!114;UBERON:0002390!8.00e-08!98;UBERON:0003061!8.00e-08!98;UBERON:0002371!1.27e-07!76;UBERON:0002193!3.22e-07!108|tf_chipseq_enrich=EBF1#1879;3:5.3438801079414:0.0118761556386811:0.0432292561950446|tfbs_overrepresentation=0.23317,0.0958562,0.877965,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.856615,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.183986,0.436695,0.38341,0.104918,0.323505,0.790836,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.769004,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.446477,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.754769,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.769028,0.875285,0.921608,0.814323,0.748392,0.944588,0.935701,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.675971,0.487888,0.568246,0.0301802,0.364364,0.796904,0.410803,0.43779,0.579996,0.569955,0.426202,0.780281,0.292173,0.528152,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.356237,0.706516,0.537972,0.591562,0.668584,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.761311,0.592924,0.438692,0.660225,0.619033,0.541742,0.762222,0.790857,0.285074,0.870229,0.943261,0.899362,0.101555,0.362164,0.289863,0.507647,0.721501,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.909149,0.766165,0.588284,0.843506,0.732646,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.826323,0.773103,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.852766,0.103509,0.935814,0.606622,0.350461,0.495024,0.307173,0.246694,0.752605,0.598317,0.666615,0.597346,0.702113,0.961692,0.493489,0.229501,0.230597,0.555864,0.544572,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.784142,0.688249,0.708682,0.427794,0.398041,0.524026,0.347879,0.58021,0.593219,0.529253,0.64728,0.903142,0.319495,0.711229,0.827435,0.616333,0.407113,0.498776,0.738012,0.423517,0.224914,0.636791,0.706243,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.809533,0.133028,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.621499,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.412647,0.102448,0.550877,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,0.294266,0.0790025,0.310539,0.580279,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.7034,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.510703,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.735114,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,0.430936,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,0.62577,0.211515,0.125701,0.175283,0.204954,0.209341,0.576888,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.893893,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,0.733648,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.98236,0.989834,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.430769,0.240825,0.3033,0.336623,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.689826,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.769574,0.262486,0.294204,0.131936,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.0432352,0.336564,0.35463,0.581771,0.800557,0.0594155,0.587524,0.208795,0.0713793,0.212621,0.594469,0.53612,0.629713,0.21728,0.355154,0.730614,0.619037,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.191067,0.764863,0.513029,0.610475,0.881697,0.561689,0.672416,0.321844,0.623136,0.708698,0.96913,0.967174,0.349068,0.70429,0.798758,0.557035,0.427789,0.689998,0.737642,0.886619,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.651196,0.392155,0.626931,0.371758,0.91821,0.562417,0.890566,0.85279,0.0355603,0.901563,0.821811,0.680843,0.931136,0.541378,0.922893,0.660884,0.922144,0.666904,0.914902,0.315485,0.311289,0.318577,0.4488,0.389888,0.603509,0.161355,0.553178,0.246387,0.224252,0.587237,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.400353,0.466967,0.283682,0.424668,0.7175,0.797471,0.583101,0.702164,0.477016,0.831202,0.498956,0.792095,0.55798,0.708394,0.932831,0.723248,0.34194,0.592696,0.592314,0.644904,0.89036,0.763919,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.135076,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.528646,0.361524,0.31558,0.412744,0.54408,0.62698,0.513592,0.415367,0.815658,0.45585,0.36864,0.538745,0.456862,0.453004,0.680686,0.557093,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.694478,0.306231,0.298354,0.646049,0.784543,0.457741,0.641611,0.426239,0.748909,0.656093,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.790204,0.557732,0.490527,0.356232,0.44799,0.813041,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.501812,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476|tfbs_overrepresentation_for_novel_motifs=0.508327,0.0561813,0.500341,0.654974,1.15291,0.653236,0.733342,0.866061,0.321368,0.106358,0.621241,0.778743,0.274093,0.721271,1.14971,0.478935,0.963929,1.02276,0.287891,0.167776,0.500405,0.121147,0.645033,0.44943,0.549618,0.802434,0.25115,0.642741,0.458349,0.233785,0.598009,1.00172,0.94379,0.758594,0.417272,0.0526856,0.413782,0.654459,0.388123,0.301779,0.415749,0.580638,0.414516,0.451846,0.476793,0.533483,0.734485,0.609718,0.393318,0.458489,0.817229,0.746838,1.06581,1.08035,1.2359,0.724351,1.17039,0.689906,0.233662,0.688844,1.04369,0.736968,0.321912,0.935408,0.755773,0.899893,1.32544,1.69665,0.991065,1.53343,0.566575,0.880217,0.189341,1.23387,0.269111,0.255232,0.240727,0.917983,2.26106,0.543014,0.293154,0.934302,0.755403,0.327263,1.18161,0.0719601,0.49825,0.228496,0.844289,1.79645,1.41984,1.15413,1.01895,0.367039,0.455791,0.381528,0.28626,1.06255,0.849074,0.211081,1.01093,1.01316,1.05685,0.967698,0.88799,0.616433,0.951411,0.717647,0.549347,0.437618,0.512457,1.05402,0.494368,0.631235,1.37132,0.412056,0.084145,0.596731,0.897476,0.968277,1.22546,0.841768,1.56655,0.767198,1.48307,0.918767,0.72668,1.02407,1.2687,0.995523,1.15483,0.601055,1.28328,0.763715,1.43285,0.629991,0.591636,0.643339,1.38998,2.25246,1.84906,1.35224,0.728494,1.05895,0.889806,0.680988,0.87256,2.09294,0.577088,0.953361,1.00998,0.126633,1.15522,0.312599,0.736459,1.56426,0.827475,0.439798,0.54968,0.518696,1.35101,1.13636,0.98692,0.522159,0.906429,0.754576,0.35004,0.731946,0.0938701|tfbs_overrepresentation_jaspar=MA0003.1;0.0497246,MA0004.1;0.626788,MA0006.1;0.452993,MA0007.1;0.606704,MA0009.1;1.11255,MA0014.1;0.161847,MA0017.1;0.496101,MA0019.1;0.784036,MA0024.1;1.00439,MA0025.1;1.24931,MA0027.1;2.73598,MA0028.1;0.470679,MA0029.1;1.02437,MA0030.1;1.01252,MA0031.1;0.945567,MA0038.1;0.736268,MA0040.1;1.03042,MA0041.1;5.1331,MA0042.1;3.68915,MA0043.1;1.11288,MA0046.1;1.10134,MA0048.1;0.569896,MA0050.1;0.613347,MA0051.1;0.731787,MA0052.1;1.03442,MA0055.1;0.603517,MA0056.1;0,MA0057.1;0.189508,MA0058.1;0.523638,MA0059.1;0.522232,MA0060.1;0.321781,MA0061.1;0.291022,MA0063.1;0,MA0066.1;0.736721,MA0067.1;1.43651,MA0068.1;0.247962,MA0069.1;1.09737,MA0070.1;1.08584,MA0071.1;0.695094,MA0072.1;1.0812,MA0073.1;0.215829,MA0074.1;0.730989,MA0076.1;0.540943,MA0077.1;1.07324,MA0078.1;0.836493,MA0081.1;0.522409,MA0083.1;1.12028,MA0084.1;1.62584,MA0087.1;1.07867,MA0088.1;0.412364,MA0089.1;0,MA0090.1;1.36977,MA0091.1;0.629594,MA0092.1;0.588959,MA0093.1;0.456342,MA0095.1;0,MA0098.1;0,MA0100.1;1.77562,MA0101.1;0.459973,MA0103.1;0.442769,MA0105.1;0.175503,MA0106.1;0.779931,MA0107.1;0.378225,MA0108.2;0.94238,MA0109.1;0,MA0111.1;0.5713,MA0113.1;0.797251,MA0114.1;0.372523,MA0115.1;1.35895,MA0116.1;0.382106,MA0117.1;1.1512,MA0119.1;0.504689,MA0122.1;1.17777,MA0124.1;1.31673,MA0125.1;1.23103,MA0130.1;0,MA0131.1;0.855546,MA0132.1;0,MA0133.1;0,MA0135.1;1.14377,MA0136.1;0.743749,MA0139.1;0.277033,MA0140.1;0.692258,MA0141.1;0.520334,MA0142.1;0.912455,MA0143.1;0.797437,MA0144.1;0.356507,MA0145.1;0.143698,MA0146.1;0.0359558,MA0147.1;0.386018,MA0148.1;0.653474,MA0149.1;0.681935,MA0062.2;0.284987,MA0035.2;0.691506,MA0039.2;0.0118463,MA0138.2;0.837782,MA0002.2;0.30855,MA0137.2;0.47779,MA0104.2;0.320919,MA0047.2;0.767096,MA0112.2;0.425004,MA0065.2;0.146576,MA0150.1;0.550239,MA0151.1;0,MA0152.1;0.69926,MA0153.1;1.21379,MA0154.1;0.172764,MA0155.1;0.130813,MA0156.1;0.480289,MA0157.1;0.883854,MA0158.1;0,MA0159.1;0.386729,MA0160.1;0.669748,MA0161.1;0,MA0162.1;0.469165,MA0163.1;0.168633,MA0164.1;0.810347,MA0080.2;0.456437,MA0018.2;0.781393,MA0099.2;0.699641,MA0079.2;3.83292e-05,MA0102.2;1.66336,MA0258.1;0.345771,MA0259.1;0.395396,MA0442.1;0}} | ||
|full_id=C1640_heart_Cardiac_skeletal_acute_Hepatocyte_renal_CD14 | |||
|id=C1640 | |||
|ontology_enrichment_celltype=CL:0002057! | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0007023! | |||
}} |
Latest revision as of 11:49, 17 September 2013
Full id: C1640_heart_Cardiac_skeletal_acute_Hepatocyte_renal_CD14
Phase1 CAGE Peaks
Hg19::chr11:65201095..65201135,+ | p@chr11:65201095..65201135 + |
Hg19::chr11:65209015..65209031,+ | p@chr11:65209015..65209031 + |
Hg19::chr11:65209062..65209080,+ | p@chr11:65209062..65209080 + |
Hg19::chr11:65209536..65209587,+ | p@chr11:65209536..65209587 + |
Hg19::chr11:65209606..65209623,+ | p@chr11:65209606..65209623 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.97e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.97e-12 | 42 |
myeloid leukocyte | 7.29e-10 | 72 |
defensive cell | 8.39e-10 | 48 |
phagocyte | 8.39e-10 | 48 |
macrophage dendritic cell progenitor | 1.50e-09 | 61 |
monopoietic cell | 7.02e-09 | 59 |
monocyte | 7.02e-09 | 59 |
monoblast | 7.02e-09 | 59 |
promonocyte | 7.02e-09 | 59 |
granulocyte monocyte progenitor cell | 2.00e-08 | 67 |
myeloid lineage restricted progenitor cell | 9.39e-08 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.89e-12 | 114 |
hematopoietic system | 8.00e-08 | 98 |
blood island | 8.00e-08 | 98 |
bone marrow | 1.27e-07 | 76 |
hemolymphoid system | 3.22e-07 | 108 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.0497246 |
MA0004.1 | 0.626788 |
MA0006.1 | 0.452993 |
MA0007.1 | 0.606704 |
MA0009.1 | 1.11255 |
MA0014.1 | 0.161847 |
MA0017.1 | 0.496101 |
MA0019.1 | 0.784036 |
MA0024.1 | 1.00439 |
MA0025.1 | 1.24931 |
MA0027.1 | 2.73598 |
MA0028.1 | 0.470679 |
MA0029.1 | 1.02437 |
MA0030.1 | 1.01252 |
MA0031.1 | 0.945567 |
MA0038.1 | 0.736268 |
MA0040.1 | 1.03042 |
MA0041.1 | 5.1331 |
MA0042.1 | 3.68915 |
MA0043.1 | 1.11288 |
MA0046.1 | 1.10134 |
MA0048.1 | 0.569896 |
MA0050.1 | 0.613347 |
MA0051.1 | 0.731787 |
MA0052.1 | 1.03442 |
MA0055.1 | 0.603517 |
MA0056.1 | 0 |
MA0057.1 | 0.189508 |
MA0058.1 | 0.523638 |
MA0059.1 | 0.522232 |
MA0060.1 | 0.321781 |
MA0061.1 | 0.291022 |
MA0063.1 | 0 |
MA0066.1 | 0.736721 |
MA0067.1 | 1.43651 |
MA0068.1 | 0.247962 |
MA0069.1 | 1.09737 |
MA0070.1 | 1.08584 |
MA0071.1 | 0.695094 |
MA0072.1 | 1.0812 |
MA0073.1 | 0.215829 |
MA0074.1 | 0.730989 |
MA0076.1 | 0.540943 |
MA0077.1 | 1.07324 |
MA0078.1 | 0.836493 |
MA0081.1 | 0.522409 |
MA0083.1 | 1.12028 |
MA0084.1 | 1.62584 |
MA0087.1 | 1.07867 |
MA0088.1 | 0.412364 |
MA0089.1 | 0 |
MA0090.1 | 1.36977 |
MA0091.1 | 0.629594 |
MA0092.1 | 0.588959 |
MA0093.1 | 0.456342 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 1.77562 |
MA0101.1 | 0.459973 |
MA0103.1 | 0.442769 |
MA0105.1 | 0.175503 |
MA0106.1 | 0.779931 |
MA0107.1 | 0.378225 |
MA0108.2 | 0.94238 |
MA0109.1 | 0 |
MA0111.1 | 0.5713 |
MA0113.1 | 0.797251 |
MA0114.1 | 0.372523 |
MA0115.1 | 1.35895 |
MA0116.1 | 0.382106 |
MA0117.1 | 1.1512 |
MA0119.1 | 0.504689 |
MA0122.1 | 1.17777 |
MA0124.1 | 1.31673 |
MA0125.1 | 1.23103 |
MA0130.1 | 0 |
MA0131.1 | 0.855546 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.14377 |
MA0136.1 | 0.743749 |
MA0139.1 | 0.277033 |
MA0140.1 | 0.692258 |
MA0141.1 | 0.520334 |
MA0142.1 | 0.912455 |
MA0143.1 | 0.797437 |
MA0144.1 | 0.356507 |
MA0145.1 | 0.143698 |
MA0146.1 | 0.0359558 |
MA0147.1 | 0.386018 |
MA0148.1 | 0.653474 |
MA0149.1 | 0.681935 |
MA0062.2 | 0.284987 |
MA0035.2 | 0.691506 |
MA0039.2 | 0.0118463 |
MA0138.2 | 0.837782 |
MA0002.2 | 0.30855 |
MA0137.2 | 0.47779 |
MA0104.2 | 0.320919 |
MA0047.2 | 0.767096 |
MA0112.2 | 0.425004 |
MA0065.2 | 0.146576 |
MA0150.1 | 0.550239 |
MA0151.1 | 0 |
MA0152.1 | 0.69926 |
MA0153.1 | 1.21379 |
MA0154.1 | 0.172764 |
MA0155.1 | 0.130813 |
MA0156.1 | 0.480289 |
MA0157.1 | 0.883854 |
MA0158.1 | 0 |
MA0159.1 | 0.386729 |
MA0160.1 | 0.669748 |
MA0161.1 | 0 |
MA0162.1 | 0.469165 |
MA0163.1 | 0.168633 |
MA0164.1 | 0.810347 |
MA0080.2 | 0.456437 |
MA0018.2 | 0.781393 |
MA0099.2 | 0.699641 |
MA0079.2 | 3.83292e-05 |
MA0102.2 | 1.66336 |
MA0258.1 | 0.345771 |
MA0259.1 | 0.395396 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
EBF1#1879 | 3 | 5.3438801079414 | 0.0118761556386811 | 0.0432292561950446 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.