FFCP PHASE1:Hg19::chr14:55494309..55494321,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=122809 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19392 | |||
|TSSclassifier=strong | |||
|UniProt=Q8WXH5 | |||
|association_with_transcript=-23bp_to_ENST00000339298_5end | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_8_at_SOCS4_5end | |||
|id=chr14:55494309..55494321,+ | |||
|ontology_enrichment_celltype=CL:0000710!5.54e-11!20;CL:0000066!1.12e-10!254;CL:0000148!4.49e-09!10;CL:0000541!4.49e-09!10;CL:0002322!9.06e-09!5;CL:0000133!2.97e-08!59;CL:0000147!2.49e-07!14;CL:0000075!4.03e-07!27;CL:0000221!6.30e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.59e-57;5!CL:0000039;8.85e-28;7!CL:0000586;8.85e-28;7!CL:0002321;2.95e-19;15!CL:0000148;7.53e-19;10!CL:0000147;1.50e-13;14!CL:0000710;1.47e-09;20!CL:0000540;1.31e-08;6!CL:0000404;1.31e-08;6!CL:0000075;3.95e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.92e-58,5;CL:0000039,9.16e-28,7;CL:0000586,9.16e-28,7;CL:0000148,7.19e-19,10;CL:0000541,7.19e-19,10;CL:0000147,1.45e-13,14;CL:0000710,1.44e-09,20;CL:0000540,1.47e-08,6;CL:0000031,1.47e-08,6;CL:0000404,1.47e-08,6;CL:0000075,3.89e-07,27 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.14e-30;10!UBERON:0005564;7.14e-30;10!CL:0000031;1.31e-08;6 | |||
|ontology_enrichment_disease=DOID:0050687!4.80e-17!143;DOID:305!5.85e-14!106;DOID:162!2.09e-12!235;DOID:14566!9.86e-12!239 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.90e-19;22!DOID:2994;2.90e-19;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.05e-19,22;DOID:2994,3.05e-19,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!6.09e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.35e-24;8!UBERON:0003135;8.37e-18;11!UBERON:0000991;3.12e-14;21!UBERON:0000922;5.90e-14;49!UBERON:0003101;5.10e-09;22!UBERON:0000079;5.10e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.43e-24,8;UBERON:0003135,8.56e-18,11;UBERON:0000991,3.30e-14,21;UBERON:0009196,3.30e-14,21;UBERON:0009117,3.30e-14,21;UBERON:0005564,3.30e-14,21;UBERON:0004176,1.47e-13,22;UBERON:0003101,5.16e-09,22;UBERON:0000079,5.16e-09,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194874010322397,0,0,0,0,0.10075209822764,0,0,0,0.286804595389004,2.92736894711029,1.98794652482228,2.32387885739037,1.86589899027667,1.7662459561294,1.09493207722749,0,0,0,0,0,0.354920400119532,0.505754070234305,0,0.220587945464788,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0.171567810298526,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317489471460845,0.381988425558278,0,0,0.205654985406647,2.40274446275134,0.285826432630578,0.112131084345361,0.43596006883328,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.366277859273374,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0,0,0.0890320356467374,0.165284915360978,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0.211125408127993,0,0,0,0.715880777515084,0,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0.787139999965761,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0.10893846351899,0.41827123283581,0,0.113942055847001,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0.751617097072463,0,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0.138674673013139,0,0.195984794828755,0.0870592065804026,0,0,0.290268993867255,0.877071805034227,0.492692742319255,0,0.353024506766001,0,0.274083849293502,0,0,0.391102765469606,0,0,0,0,0.572682980829578,0.343189995723929,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,1.12527203925513,1.10031549277787,0.83088067605837,0,0,0,0,0,0,0.105600336519406,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0.566560457600628,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0.449803112163605,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0.231522474323834,0,0,0,0,0,0.192914038270915,0,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0,0,0.107824811396682,0,0.327628914576042,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0.0981477185010256,0.11796972334774,0.183428598521679,0,0,0,0.198916222116275,0.150420656698515,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0.118193840883968,0.111231401892069,0,0,0,0,0,0,0,0,4.88213986546126,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0.233939463462106,0,0,0.11294608203896,0,0.150962843566674,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,2.01866279736126,5.90034088603956,0.126698501011437,5.40540797632503,29.1266971739461,12.1301267385995,9.0254714145255,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0,0.320568492303233 | |||
|short_description=p8@SOCS4 | |||
}} |
Revision as of 20:13, 11 January 2014
Short description: | p8@SOCS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SOCS4_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | -23bp_to_ENST00000339298_5end |
EntrezGene: | SOCS4 |
HGNC: | 19392 |
UniProt: | Q8WXH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.92e-58 | 5 |
germ line cell | 9.16e-28 | 7 |
germ cell | 9.16e-28 | 7 |
melanocyte | 7.19e-19 | 10 |
melanoblast | 7.19e-19 | 10 |
pigment cell | 1.45e-13 | 14 |
neurecto-epithelial cell | 1.44e-09 | 20 |
neuron | 1.47e-08 | 6 |
neuroblast | 1.47e-08 | 6 |
electrically signaling cell | 1.47e-08 | 6 |
columnar/cuboidal epithelial cell | 3.89e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
testis | 2.43e-24 | 8 |
male reproductive organ | 8.56e-18 | 11 |
gonad | 3.30e-14 | 21 |
indifferent external genitalia | 3.30e-14 | 21 |
indifferent gonad | 3.30e-14 | 21 |
gonad primordium | 3.30e-14 | 21 |
external genitalia | 1.47e-13 | 22 |
male organism | 5.16e-09 | 22 |
male reproductive system | 5.16e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.05e-19 | 22 |
germ cell cancer | 3.05e-19 | 22 |