FFCP PHASE1:Hg19::chr2:56094202..56094227,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C395 | |||
|description=CAGE_peak_at_chr2:56094202..56094227,- | |||
|id=chr2:56094202..56094227,- | |||
|ontology_enrichment_celltype=CL:0000222!2.79e-19!119;CL:0000213!1.85e-14!57;CL:0000215!1.85e-14!57;CL:0000057!9.10e-13!75;CL:0000055!2.31e-12!180;CL:0002139!3.29e-11!24;CL:0000220!1.45e-09!246;CL:0002321!2.93e-09!248;CL:0002078!4.00e-08!44;CL:0000187!1.02e-07!54;CL:0000115!1.99e-07!35;CL:0002494!2.20e-07!16;CL:0000076!2.39e-07!62;CL:0000680!2.87e-07!57;CL:0000056!2.87e-07!57;CL:0000355!2.87e-07!57;CL:0000071!7.77e-07!18;CL:0002546!7.77e-07!18;CL:0000077!8.20e-07!19;CL:0000192!9.10e-07!42;CL:0000514!9.10e-07!42;CL:0000359!9.39e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002138;1.80e-12;6!CL:0002139;9.95e-12;24!CL:0000153;3.97e-09;9!CL:0000447;3.97e-09;9!CL:0000213;1.05e-08;58!CL:0000215;1.05e-08;58!CL:0000115;4.36e-08;36!CL:0002078;5.39e-08;45!CL:0000135;5.60e-08;3!CL:0000388;5.60e-08;3!CL:0002548;1.32e-07;6!CL:0002144;2.00e-07;3!CL:0002334;3.77e-07;12!CL:0002615;8.04e-07;3!CL:0002580;9.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.51e-16,76;CL:0000213,3.26e-13,58;CL:0000215,3.26e-13,58;CL:0005020,1.26e-12,6;CL:0002138,1.26e-12,6;CL:0005022,1.26e-12,6;CL:0000222,2.80e-12,121;CL:0002139,9.29e-12,24;CL:0000115,1.58e-09,36;CL:0002078,1.95e-09,45;CL:0000153,3.73e-09,9;CL:0000447,3.73e-09,9;CL:0000048,1.36e-08,427;CL:0000723,3.13e-08,433;CL:0000135,5.58e-08,3;CL:0000388,5.58e-08,3;CL:0000034,9.12e-08,441;CL:0002334,2.45e-07,12;CL:0002548,2.66e-07,6;CL:0002144,2.82e-07,3;CL:0002580,5.06e-07,3;CL:0002615,8.76e-07,3 | |||
|ontology_enrichment_development_v019=CL:0005022;1.80e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.38e-10;5!DOID:450;1.38e-10;5!DOID:66;1.38e-10;5!DOID:423;1.38e-10;5!DOID:0080000;1.38e-10;5!DOID:11722;1.38e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.68e-10,5;DOID:450,2.68e-10,5;DOID:66,2.68e-10,5;DOID:423,2.68e-10,5;DOID:0080000,2.68e-10,5;DOID:11722,2.68e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0004872!4.87e-20!84;UBERON:0002049!4.09e-19!79;UBERON:0007798!4.09e-19!79;UBERON:0004535!2.01e-18!110;UBERON:0001009!4.06e-18!113;UBERON:0000055!1.36e-17!69;UBERON:0001981!3.85e-15!60;UBERON:0007500!3.85e-15!60;UBERON:0004537!3.85e-15!60;UBERON:0006965!3.85e-15!60;UBERON:0003914!1.51e-13!118;UBERON:0001637!2.92e-12!42;UBERON:0003509!2.92e-12!42;UBERON:0004572!2.92e-12!42;UBERON:0000477!3.76e-10!286;UBERON:0004573!1.17e-09!33;UBERON:0004571!1.17e-09!33;UBERON:0004111!6.16e-09!241;UBERON:0000490!1.10e-08!138;UBERON:0006914!1.99e-08!25;UBERON:0000948!2.72e-08!24;UBERON:0005498!2.72e-08!24;UBERON:0004140!2.72e-08!24;UBERON:0009881!2.72e-08!24;UBERON:0004141!2.72e-08!24;UBERON:0003084!2.72e-08!24;UBERON:0007005!2.72e-08!24;UBERON:0004139!2.72e-08!24;UBERON:0004291!2.72e-08!24;UBERON:0000947!7.24e-08!21;UBERON:0010191!7.24e-08!21;UBERON:0007100!1.16e-07!27;UBERON:0000483!3.88e-07!309;UBERON:0002385!4.93e-07!63;UBERON:0001015!4.93e-07!63;UBERON:0000383!4.93e-07!63;UBERON:0001986!7.77e-07!18;UBERON:0004638!7.77e-07!18;UBERON:0004852!7.77e-07!18;UBERON:0000119!8.47e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.62e-13;9!UBERON:0000042;1.62e-13;9!UBERON:0003688;3.61e-11;6!UBERON:0002358;3.61e-11;6!UBERON:0003684;3.61e-11;6!UBERON:0001178;3.61e-11;6!UBERON:0001473;3.93e-09;8!UBERON:0004536;3.93e-09;8!UBERON:0006558;3.93e-09;8!UBERON:0007846;5.60e-08;3!UBERON:0000043;5.60e-08;3!UBERON:0007845;5.60e-08;3!UBERON:0000055;7.59e-08;65!UBERON:0010523;2.00e-07;3!UBERON:0001915;2.00e-07;3!UBERON:0001982;2.00e-07;3!UBERON:0002465;3.94e-07;10!UBERON:0000310;5.93e-07;10!UBERON:0002049;6.10e-07;75!UBERON:0007798;6.10e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,7.39e-14,109;UBERON:0001009,3.14e-13,112;UBERON:0002049,1.16e-12,78;UBERON:0007798,1.16e-12,78;UBERON:0000055,5.07e-12,68;UBERON:0004872,2.66e-11,83;UBERON:0003688,3.19e-11,6;UBERON:0002358,3.19e-11,6;UBERON:0003684,3.19e-11,6;UBERON:0001178,3.19e-11,6;UBERON:0004457,8.75e-10,12;UBERON:0000042,8.75e-10,12;UBERON:0003914,1.62e-09,117;UBERON:0001473,3.03e-09,8;UBERON:0004536,3.03e-09,8;UBERON:0006558,3.03e-09,8;UBERON:0007846,5.58e-08,3;UBERON:0000043,5.58e-08,3;UBERON:0007845,5.58e-08,3;UBERON:0007500,1.63e-07,59;UBERON:0001981,1.63e-07,59;UBERON:0004537,1.63e-07,59;UBERON:0006965,1.63e-07,59;UBERON:0010523,2.82e-07,3;UBERON:0001915,2.82e-07,3;UBERON:0001982,2.82e-07,3;UBERON:0002465,3.22e-07,10;UBERON:0000310,3.74e-07,10;UBERON:0001637,4.39e-07,42;UBERON:0003509,4.39e-07,42;UBERON:0004572,4.39e-07,42 | |||
|phase1_expression=3.45188920614058,2.99740733447376,2.39622486963151,4.00293193412522,1.34088328328186,14.8297549097063,0,0,0.522371256399677,0,0,0,0,0.247532705920093,1.65698687863958,2.01697543935533,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,0.639312809217652,10.1202962667679,7.52006865953834,10.718642403101,0,3.89307896242109,0.283604451492204,1.10864698731282,0.527008714158756,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,0,2.09749718104953,0.825354125820202,1.25396979922086,2.58416759169329,2.13459757612026,2.67776490211736,2.01414658554573,9.12326526862215,3.41686880567437,1.83831540172934,0.81014194788176,2.58969212023831,0.673588117878509,0.675668882899933,0,0,0.366403487860815,0,0,0,2.98183171017191,4.05217637326655,0.264818361626438,8.60509862246441,1.41867352879343,1.12135520028461,1.06748995729705,1.2333377420858,0.311211035399766,2.15537075311501,1.47115712802113,0.302714855289863,1.15235184896,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0.150238058906597,2.49550802952046,3.22901344239952,3.41691822109708,3.17897851739343,2.10063767259082,1.13357782162283,0.257640540045629,0.558350568994769,0.337552664482532,0.584622030967192,1.26216887122057,1.38074847963449,1.77810662500693,2.13005755509969,0.302256294682921,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0,0,0,0,0.237270619111097,0,0.588664395376038,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.219500570817251,0,0.100528972411631,0.185176890317059,0,0,0,0,0.352226082707465,1.58803092537181,8.33373922637899,8.75169100279152,0,0,0,0,0,0,0.16798212819886,0,0.358234090811393,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,1.57275793023962,0.542621605391443,0,0.325736184293735,1.42156779497018,1.58390374586686,0,0,0.399891964728228,0,0,0,0,1.14861935834114,0,0,0,0.179060963239896,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.36807447515742,1.00034104211935,0.271265023699736,2.49565033836969,0.535286966391485,2.36553622550902,2.22568688486155,0,2.27407504055985,2.0694614258501,0,0,0.260650843404249,0,0,0,0,0,0,0,0.604780586659361,2.72918588600655,1.84154367945675,3.64858122762996,1.40953064181271,1.53512174720011,1.60853921143608,4.45254199334973,0,0.710246901252508,0,0,0.116210378459959,0,1.00253235151642,0.644566922551274,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,4.75015015424707,4.62681758070868,0,0,0,0,0,0,0,0,0.984043937099117,0,0.412164046590889,0,0,0,0,8.03419649220798,0,0.616194468458578,0.307007349452259,0,0.214840489736547,0.725083469571143,0,0,0.495854746082934,0,0.127612712494584,0.2023155617111,0.464845549297286,2.20368642781448,0.6970372701606,0.308033580176089,0,0.869932992075073,0.74129687641568,0.286249773483982,0,0.316379424718726,3.24071329670502,0.255897791311334,0.42793898803392,1.27281299170375,0.78494864019923,0.359744915166629,1.64722217841633,0.824686816419805,0.404364963146632,0,0,0,2.19342140668156,2.11300293513511,0,1.41405431953713,2.26016233240486,0,0,5.69986150829892,0,0,0.202910376962704,0,1.12678241012897,0,0.392996164052485,0,0,10.7664894001809,22.0627578283134,0,0,0.384888450902048,0,0,0.188287601553558,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.19372242368845,0,1.53580351049616,0,0,0.779160935160341,0,0,0.796991953004279,0,0,0.920418142519393,0,0.933118762985422,0,0,0,0.394573622547734,0,0,0,0.185536196323703,0,0,0,2.17499872630438,0.227586896570999,0.254253650292766,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0.83654246567162,0.230850775511391,1.25336261431701,0,0,0,0.31900115973192,0,4.79731298416771,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.52418000472609,0,0.0967563312890851,0.0730893170861856,0,0.290967049465258,0,0.451961481561065,1.91858694505451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.837847203816763,0.916641696046735,0,0,0.858452096273142,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.315222829196793,0,0,1.6135860539956,0.575745591958336,0.714695326373367,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.387848869084652,0.13223260174269,0,0,0.320362237703084,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0.612691153526923,0.327872630709804,0,0,0.976210119215705,0,0.573409195690071,0,0.124192805882767,0,0.624902039810533,0,0,0,0,0,0.597019211547496,0.934853239388898,0.554805861502613,0.378806010550178,1.76097531226803,3.55924488638614,0.457680136793847,3.62954217031774,0.15543720058278,0.443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| |||
|short_description=p@chr2:56094202..56094227,- | |||
}} |
Revision as of 03:16, 21 January 2014
Short description: | p@chr2:56094202..56094227, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:56094202..56094227, - |
Coexpression cluster: | C395_Synoviocyte_Cardiac_Fibroblast_mesothelioma_Endothelial_Chondrocyte_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.51e-16 | 76 |
lining cell | 3.26e-13 | 58 |
barrier cell | 3.26e-13 | 58 |
lymphangioblast | 1.26e-12 | 6 |
endothelial cell of lymphatic vessel | 1.26e-12 | 6 |
vascular lymphangioblast | 1.26e-12 | 6 |
mesodermal cell | 2.80e-12 | 121 |
endothelial cell of vascular tree | 9.29e-12 | 24 |
endothelial cell | 1.58e-09 | 36 |
meso-epithelial cell | 1.95e-09 | 45 |
GAG secreting cell | 3.73e-09 | 9 |
carbohydrate secreting cell | 3.73e-09 | 9 |
multi fate stem cell | 1.36e-08 | 427 |
somatic stem cell | 3.13e-08 | 433 |
fibrocyte | 5.58e-08 | 3 |
tendon cell | 5.58e-08 | 3 |
stem cell | 9.12e-08 | 441 |
preadipocyte | 2.45e-07 | 12 |
cardiac fibroblast | 2.66e-07 | 6 |
capillary endothelial cell | 2.82e-07 | 3 |
preadipocyte of the breast | 5.06e-07 | 3 |
adipocyte of omentum tissue | 8.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 7.39e-14 | 109 |
circulatory system | 3.14e-13 | 112 |
vasculature | 1.16e-12 | 78 |
vascular system | 1.16e-12 | 78 |
vessel | 5.07e-12 | 68 |
splanchnic layer of lateral plate mesoderm | 2.66e-11 | 83 |
omentum | 3.19e-11 | 6 |
peritoneum | 3.19e-11 | 6 |
abdominal cavity | 3.19e-11 | 6 |
visceral peritoneum | 3.19e-11 | 6 |
cavity lining | 8.75e-10 | 12 |
serous membrane | 8.75e-10 | 12 |
epithelial tube | 1.62e-09 | 117 |
lymphatic vessel | 3.03e-09 | 8 |
lymph vasculature | 3.03e-09 | 8 |
lymphatic part of lymphoid system | 3.03e-09 | 8 |
dense regular connective tissue | 5.58e-08 | 3 |
tendon | 5.58e-08 | 3 |
regular connective tissue | 5.58e-08 | 3 |
epithelial tube open at both ends | 1.63e-07 | 59 |
blood vessel | 1.63e-07 | 59 |
blood vasculature | 1.63e-07 | 59 |
vascular cord | 1.63e-07 | 59 |
microcirculatory vessel | 2.82e-07 | 3 |
endothelium of capillary | 2.82e-07 | 3 |
capillary | 2.82e-07 | 3 |
lymphoid system | 3.22e-07 | 10 |
breast | 3.74e-07 | 10 |
artery | 4.39e-07 | 42 |
arterial blood vessel | 4.39e-07 | 42 |
arterial system | 4.39e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.68e-10 | 5 |
myotonic disease | 2.68e-10 | 5 |
muscle tissue disease | 2.68e-10 | 5 |
myopathy | 2.68e-10 | 5 |
muscular disease | 2.68e-10 | 5 |
myotonic dystrophy | 2.68e-10 | 5 |