FFCP PHASE1:Hg19::chr3:2140383..2140394,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152330 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2174 | |||
|TSSclassifier=strong | |||
|UniProt=C9JMQ2 | |||
|association_with_transcript=-102bp_to_ENST00000422330_5end | |||
|coexpression_cluster_id=C4319 | |||
|description=CAGE_peak_13_at_CNTN4_5end | |||
|id=chr3:2140383..2140394,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000138;5.54e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,5.54e-08,6;CL:0000138,5.54e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.75e-53;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;6.62e-41;1!DOID:4549;6.62e-41;1!DOID:5861;6.62e-41;1!DOID:6496;6.62e-41;1!DOID:201;5.54e-08;6!DOID:0060100;5.54e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,6.62e-41,1;DOID:4549,6.62e-41,1;DOID:5861,6.62e-41,1;DOID:6496,6.62e-41,1;DOID:201,5.54e-08,6;DOID:0060100,5.54e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-29!115;UBERON:0002346!7.66e-23!90;UBERON:0003075!1.30e-21!86;UBERON:0007284!1.30e-21!86;UBERON:0001049!4.00e-20!57;UBERON:0005068!4.00e-20!57;UBERON:0006241!4.00e-20!57;UBERON:0007135!4.00e-20!57;UBERON:0002616!4.12e-16!59;UBERON:0003056!7.89e-15!61;UBERON:0000955!1.21e-14!69;UBERON:0006238!1.21e-14!69;UBERON:0005743!1.42e-14!86;UBERON:0000073!2.71e-14!94;UBERON:0001016!2.71e-14!94;UBERON:0001017!2.73e-13!82;UBERON:0002780!8.12e-13!41;UBERON:0001890!8.12e-13!41;UBERON:0006240!8.12e-13!41;UBERON:0003080!2.16e-12!42;UBERON:0000153!3.14e-12!129;UBERON:0007811!3.14e-12!129;UBERON:0000033!1.34e-11!123;UBERON:0001893!3.01e-11!34;UBERON:0000924!4.97e-11!173;UBERON:0006601!4.97e-11!173;UBERON:0000956!5.15e-11!25;UBERON:0000203!5.15e-11!25;UBERON:0002619!6.30e-11!22;UBERON:0001869!8.28e-11!32;UBERON:0001950!1.76e-10!20;UBERON:0004121!3.70e-10!169;UBERON:0002791!4.49e-10!33;UBERON:0002020!1.01e-09!34;UBERON:0003528!1.01e-09!34;UBERON:0003076!1.47e-09!15;UBERON:0003057!1.47e-09!15;UBERON:0000064!2.69e-08!219;UBERON:0000200!4.05e-08!6;UBERON:0001155!9.38e-08!9;UBERON:0004733!1.18e-07!12;UBERON:0002028!1.18e-07!12;UBERON:0007277!1.18e-07!12;UBERON:0000063!4.33e-07!97;UBERON:0004732!5.77e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.11e-27;6!UBERON:0000007;5.15e-21;2!UBERON:0002680;1.48e-18;9!UBERON:0001895;1.48e-18;9!UBERON:0002418;1.22e-14;3!UBERON:0004755;1.22e-14;3!UBERON:0002114;1.71e-14;2!UBERON:0004733;3.36e-14;12!UBERON:0002028;3.36e-14;12!UBERON:0004732;3.43e-13;13!UBERON:0003296;3.26e-11;4!UBERON:0010133;3.26e-11;4!UBERON:0002108;3.10e-09;4!UBERON:0001894;5.86e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.72e-27,6;UBERON:0006215,2.72e-27,6;UBERON:0000007,4.66e-21,2;UBERON:0002680,1.35e-18,9;UBERON:0001895,1.35e-18,9;UBERON:0010092,1.35e-18,9;UBERON:0002418,1.22e-14,3;UBERON:0004755,1.22e-14,3;UBERON:0002114,2.09e-14,2;UBERON:0004733,3.14e-14,12;UBERON:0002028,3.14e-14,12;UBERON:0007277,3.14e-14,12;UBERON:0004732,3.22e-13,13;UBERON:0003076,1.34e-11,15;UBERON:0003057,1.34e-11,15;UBERON:0003296,3.10e-11,4;UBERON:0010133,3.10e-11,4;UBERON:0002108,3.49e-09,4;UBERON:0000073,2.12e-07,53;UBERON:0002616,2.12e-07,53;UBERON:0001049,4.78e-07,56;UBERON:0005068,4.78e-07,56;UBERON:0006241,4.78e-07,56;UBERON:0007135,4.78e-07,56;UBERON:0001894,5.70e-07,7;UBERON:0006222,5.70e-07,7 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.463721619900307,0.234817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0.103041011647722,0.366277859273374,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.471249609382746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0.671028323677248,0.333698283423817,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0.796991953004279,0.276283915531148,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,1.52581736317083,1.21637185924347,0.591095237907095,0,0,0,0.153900517007594,0,0,0.269272933229316,0.977826347298073,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0.424059214301822,0,0,0,0.611030144933625,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,4.41280633457501,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0.236417121897595,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.332787154610557,0.310482014706917,0,0,0.151649117541648,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,0.169732529954025,0.212574920101683,0,0,0,0,0,0,0.6124909547064,0.192687675289379,0,0,0.205116364240755,0,0.207471757392654,0,0,0,0,0,0,0,0,0.596748666348824,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.570742291745161,0,0,0,0,0,0,0,0,1.36597314810779,0,0,0,0.271878931907327,0.263091094251396,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,0.158013611732727,0,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0.935757853848423,0,0.118920090777569,0,0,0.150962843566674,0.231522474323834,0,0,0.245148321753905,0,0.196308467114945,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,1.0580536810308,0,0,0,0,0.109265571963696,0,0,0,0,0,0.378893491091197,0.535928260312357,0,0.20686599172379,0,0.23806443146374,0,0.124149428591716,0,0.190941474834495,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.366724332548599,0,0,0.201273793591026,0 | |||
|short_description=p13@CNTN4 | |||
}} |
Revision as of 16:56, 21 January 2014
Short description: | p13@CNTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_CNTN4_5end |
Coexpression cluster: | C4319_extraskeletal_thyroid_pituitary_cerebellum_aorta_parietal_colon |
Association with transcript: | -102bp_to_ENST00000422330_5end |
EntrezGene: | CNTN4 |
HGNC: | 2174 |
UniProt: | C9JMQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 5.54e-08 | 6 |
chondrocyte | 5.54e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.72e-27 | 6 |
rhombic lip | 2.72e-27 | 6 |
pituitary gland | 4.66e-21 | 2 |
regional part of metencephalon | 1.35e-18 | 9 |
metencephalon | 1.35e-18 | 9 |
future metencephalon | 1.35e-18 | 9 |
cartilage tissue | 1.22e-14 | 3 |
skeletal tissue | 1.22e-14 | 3 |
duodenum | 2.09e-14 | 2 |
segmental subdivision of hindbrain | 3.14e-14 | 12 |
hindbrain | 3.14e-14 | 12 |
presumptive hindbrain | 3.14e-14 | 12 |
segmental subdivision of nervous system | 3.22e-13 | 13 |
posterior neural tube | 1.34e-11 | 15 |
chordal neural plate | 1.34e-11 | 15 |
gland of diencephalon | 3.10e-11 | 4 |
neuroendocrine gland | 3.10e-11 | 4 |
small intestine | 3.49e-09 | 4 |
regional part of nervous system | 2.12e-07 | 53 |
regional part of brain | 2.12e-07 | 53 |
neural tube | 4.78e-07 | 56 |
neural rod | 4.78e-07 | 56 |
future spinal cord | 4.78e-07 | 56 |
neural keel | 4.78e-07 | 56 |
diencephalon | 5.70e-07 | 7 |
future diencephalon | 5.70e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 6.62e-41 | 1 |
extraosseous chondrosarcoma | 6.62e-41 | 1 |
myxoid chondrosarcoma | 6.62e-41 | 1 |
extraskeletal myxoid chondrosarcoma | 6.62e-41 | 1 |
connective tissue cancer | 5.54e-08 | 6 |
musculoskeletal system cancer | 5.54e-08 | 6 |