FFCP PHASE1:Hg19::chr4:114900126..114900138,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79642 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26286 | |||
|TSSclassifier=strong | |||
|UniProt=Q1HA39 | |||
|association_with_transcript=13bp_to_ENST00000541197_5end | |||
|description=CAGE_peak_19_at_ARSJ_5end | |||
|id=chr4:114900126..114900138,- | |||
|ontology_enrichment_celltype=CL:0000055!8.29e-16!180;CL:0000222!1.16e-11!119;CL:0000192!3.20e-10!42;CL:0000514!3.20e-10!42;CL:0000071!1.35e-09!18;CL:0002546!1.35e-09!18;CL:0002139!1.80e-09!24;CL:1000413!4.80e-09!9;CL:0000359!5.11e-09!32;CL:0002371!3.16e-08!591;CL:0000680!6.10e-08!57;CL:0000056!6.10e-08!57;CL:0000355!6.10e-08!57;CL:0000187!1.27e-07!54;CL:0000115!1.50e-07!35;CL:0000057!1.58e-07!75;CL:0000183!2.54e-07!59;CL:0000393!2.97e-07!60;CL:0000211!2.97e-07!60;CL:0002078!5.43e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002569;2.08e-11;6!CL:0002589;6.93e-09;2!CL:0000349;5.54e-08;19!CL:0000359;1.55e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,2.13e-11,6;CL:0002589,5.49e-09,2;CL:0000349,5.74e-08,19;CL:0000359,5.80e-08,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;8.85e-17;1!DOID:3451;4.70e-09;2!DOID:4159;4.70e-09;2!DOID:0060122;4.70e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,8.86e-17,1;DOID:3451,4.70e-09,2;DOID:4159,4.70e-09,2;DOID:0060122,4.70e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001637!6.09e-15!42;UBERON:0003509!6.09e-15!42;UBERON:0004572!6.09e-15!42;UBERON:0001981!5.74e-14!60;UBERON:0007500!5.74e-14!60;UBERON:0004537!5.74e-14!60;UBERON:0006965!5.74e-14!60;UBERON:0002049!1.37e-13!79;UBERON:0007798!1.37e-13!79;UBERON:0000055!2.12e-13!69;UBERON:0004872!3.28e-12!84;UBERON:0004535!3.41e-10!110;UBERON:0001009!1.15e-09!113;UBERON:0001986!1.35e-09!18;UBERON:0004638!1.35e-09!18;UBERON:0004852!1.35e-09!18;UBERON:0003914!2.07e-09!118;UBERON:0003915!4.80e-09!9;UBERON:0004700!4.80e-09!9;UBERON:0001917!4.80e-09!9;UBERON:0000490!5.56e-09!138;UBERON:0004573!9.04e-09!33;UBERON:0004571!9.04e-09!33;UBERON:0000914!1.32e-07!83;UBERON:0002329!1.32e-07!83;UBERON:0003077!1.32e-07!83;UBERON:0003059!1.32e-07!83;UBERON:0007282!1.32e-07!83;UBERON:0009618!1.32e-07!83;UBERON:0007285!1.32e-07!83;UBERON:0006914!2.31e-07!25;UBERON:0000487!2.35e-07!22;UBERON:0000477!3.45e-07!286;UBERON:0001134!4.61e-07!61;UBERON:0002036!4.61e-07!61;UBERON:0003082!4.61e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;8.85e-17;1!UBERON:0003422;2.08e-11;6!UBERON:0003104;6.55e-10;7!UBERON:0009142;6.55e-10;7!UBERON:0001529;6.93e-09;2!UBERON:0007204;6.93e-09;2!UBERON:0002331;3.38e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,7.57e-17,1;UBERON:0003422,2.13e-11,6;UBERON:0001529,5.49e-09,2;UBERON:0007204,5.49e-09,2;UBERON:0002331,3.44e-07,10;UBERON:0000358,3.44e-07,10;UBERON:0000307,3.44e-07,10;UBERON:0000091,3.44e-07,10;UBERON:0000087,3.44e-07,10;UBERON:0007010,3.44e-07,10;UBERON:0007806,3.44e-07,10;UBERON:0008780,3.44e-07,10;UBERON:0005728,3.44e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.434539556882471,0,0,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,0,0,0.33472061276467,0,0,0,0.735326160691737,0,0.267899184852239,0.22452937262617,0.225222960966644,0,0.949265659568129,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0.622422070799533,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0,0.277064115484183,0,0.30648779579902,0.150238058906597,0.453728732640084,0.179389635688862,0.427114777637135,0.211931901159562,0.300091096084402,0,0,0.18611685633159,0.506328996723799,0.0974370051611986,0,0,0.161646056818812,1.06502877754984,1.0075209822764,0.169560592310488,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.651616610620649,0,0,0,0.117408694235822,0.577465791044295,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0.823240336780769,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,7.90762023122223,4.59447743336456,0,1.15825045334063,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0.207970861530807,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0.200506470303285,0,0.114814448164607,0.182091168006717,0.262248829918848,0,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0,0.532306030317022,0.869932992075073,1.48259375283136,0.572499546967965,0,0,0.190630193923825,0.511795582622668,0.42793898803392,0,0,0.179872457583315,0,0,0.202182481573316,4.75530963519025,0,0.975267478179181,0.243713489631284,0,0,0.141405431953713,0,0.551365343546124,0,1.31535265576129,0,0,1.21746226177622,0.30982349809975,0,0.143411352204052,0,0.7133421029625,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07875276582847,0,0,0,0.111308705022906,0,0,0,0,0,0,0,2.17727711363265,0.0898683511473268,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0.521745061811734,0.150257608997218,0.380805212168795,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521574816907738,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p19@ARSJ | |||
}} |
Revision as of 02:50, 22 January 2014
Short description: | p19@ARSJ |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_ARSJ_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000541197_5end |
EntrezGene: | ARSJ |
HGNC: | 26286 |
UniProt: | Q1HA39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 2.13e-11 | 6 |
smooth muscle cell of the brachiocephalic vasculature | 5.49e-09 | 2 |
extraembryonic cell | 5.74e-08 | 19 |
vascular associated smooth muscle cell | 5.80e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 7.57e-17 | 1 |
mesenchyme of umbilical cord | 2.13e-11 | 6 |
brachiocephalic artery | 5.49e-09 | 2 |
brachiocephalic vasculature | 5.49e-09 | 2 |
umbilical cord | 3.44e-07 | 10 |
blastocyst | 3.44e-07 | 10 |
blastula | 3.44e-07 | 10 |
bilaminar disc | 3.44e-07 | 10 |
inner cell mass | 3.44e-07 | 10 |
cleaving embryo | 3.44e-07 | 10 |
connecting stalk | 3.44e-07 | 10 |
inner cell mass derived epiblast | 3.44e-07 | 10 |
extraembryonic mesoderm | 3.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 8.86e-17 | 1 |
skin carcinoma | 4.70e-09 | 2 |
skin cancer | 4.70e-09 | 2 |
integumentary system cancer | 4.70e-09 | 2 |