FFCP PHASE1:Hg19::chr6:31763283..31763294,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7407 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12651 | |||
|TSSclassifier=strong | |||
|UniProt=A2ABF4 | |||
|association_with_transcript=-7bp_to_ENST00000440048_5end | |||
|description=CAGE_peak_4_at_VARS_5end | |||
|id=chr6:31763283..31763294,- | |||
|ontology_enrichment_celltype=CL:0000220!1.86e-15!246;CL:0002321!2.51e-15!248;CL:0000548!2.91e-13!679;CL:0000004!2.91e-13!679;CL:0000255!2.91e-13!679;CL:0000012!3.14e-13!682;CL:0000066!6.49e-13!254;CL:0000055!3.00e-10!180;CL:0000222!5.02e-10!119;CL:0000192!2.54e-08!42;CL:0000514!2.54e-08!42;CL:0000144!7.64e-08!625;CL:0000183!1.55e-07!59;CL:0000003!1.65e-07!722;CL:0000680!2.80e-07!57;CL:0000056!2.80e-07!57;CL:0000355!2.80e-07!57;CL:0000187!5.05e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.39e-08;32!CL:0000192;7.41e-08;43!CL:0002202;5.83e-07;9!CL:0002632;5.83e-07;9!CL:1000449;6.51e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,2.03e-10,43;CL:0000514,2.03e-10,43;CL:0002321,2.56e-10,250;CL:0000222,1.19e-09,121;CL:0000680,1.91e-08,58;CL:0000056,1.91e-08,58;CL:0000355,1.91e-08,58;CL:0000187,3.70e-08,55;CL:0000359,3.83e-08,32;CL:0000393,2.66e-07,61;CL:0000211,2.66e-07,61;CL:0002202,8.23e-07,9;CL:0002632,8.23e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000514;7.41e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004573!1.01e-09!33;UBERON:0004571!1.01e-09!33;UBERON:0000119!1.34e-09!312;UBERON:0001637!1.87e-09!42;UBERON:0003509!1.87e-09!42;UBERON:0004572!1.87e-09!42;UBERON:0000483!3.69e-09!309;UBERON:0000475!9.10e-09!365;UBERON:0000055!1.31e-08!69;UBERON:0002049!1.80e-08!79;UBERON:0007798!1.80e-08!79;UBERON:0000486!3.28e-08!82;UBERON:0001981!1.40e-07!60;UBERON:0007500!1.40e-07!60;UBERON:0004537!1.40e-07!60;UBERON:0006965!1.40e-07!60;UBERON:0003914!3.17e-07!118;UBERON:0004290!4.23e-07!70;UBERON:0002100!4.95e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.02e-11;33!UBERON:0004571;5.02e-11;33!UBERON:0001637;1.05e-09;42!UBERON:0003509;1.05e-09;42!UBERON:0004572;1.05e-09;42!UBERON:0003914;1.87e-08;74!UBERON:0000947;2.20e-08;21!UBERON:0010191;2.20e-08;21!UBERON:0001737;5.54e-08;9!UBERON:0001557;5.54e-08;9!UBERON:0001851;4.44e-07;15!UBERON:0006555;6.51e-07;15!UBERON:0004819;6.51e-07;15!UBERON:0001285;6.51e-07;15!UBERON:0007684;6.51e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.49e-12,42;UBERON:0003509,1.49e-12,42;UBERON:0004572,1.49e-12,42;UBERON:0004573,1.50e-12,33;UBERON:0004571,1.50e-12,33;UBERON:0007503,4.82e-10,78;UBERON:0000055,5.22e-10,68;UBERON:0007500,4.60e-09,59;UBERON:0001981,4.60e-09,59;UBERON:0004537,4.60e-09,59;UBERON:0006965,4.60e-09,59;UBERON:0003914,9.08e-09,117;UBERON:0002049,1.24e-08,78;UBERON:0007798,1.24e-08,78;UBERON:0000947,1.64e-08,21;UBERON:0010191,1.64e-08,21;UBERON:0003077,1.80e-08,72;UBERON:0007285,1.80e-08,72;UBERON:0001737,2.62e-08,9;UBERON:0000486,2.70e-08,83;UBERON:0002329,2.96e-08,71;UBERON:0003059,2.96e-08,71;UBERON:0007282,2.96e-08,71;UBERON:0004290,2.96e-08,71;UBERON:0009618,2.96e-08,71;UBERON:0007524,3.55e-08,73;UBERON:0002100,3.78e-08,199;UBERON:0001134,3.52e-07,62;UBERON:0002036,3.52e-07,62;UBERON:0003082,3.52e-07,62 | |||
|phase1_expression=1.09007027562334,0.642301571672949,1.55049844505568,2.00146596706261,1.34088328328186,0,0,1.26343974685366,1.30592814099919,3.19454117451962,5.58240934377942,0.873765488520689,2.63766978228454,0.37129905888014,0.662794751455832,2.6893005858071,0.602694528023977,1.46062018077475,1.46379839637152,1.35433163884467,2.04000691244253,1.25381888591235,0.572471974262113,1.09499540058307,0.502170558379211,0.840547463227464,1.23150884174919,0.944529375764151,0,0,0,2.75826367343678,3.0120591877825,2.58827807116751,0.46480320348181,0.853015394924529,0,0,0.401088894940283,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0.16072558669708,0.285012743741249,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,1.32171328579026,0,0.526768169550154,0,0.393010762749165,0,0.167186495390678,0,0,0,0.557052284425868,0,0,0,0.25618263945135,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0,0,0,1.34140171940727,0.639312809217652,2.1686349143074,1.50401373190767,1.01392563272577,0.795285947051099,1.45990461090791,0.661743720148475,1.10864698731282,0.966182642624386,0.523916301990851,0,1.48313777113772,0.324547393654683,0.174129737299267,0.26591592103773,0.715471872916026,0,0,1.19257444420023,1.72046919021225,2.77712401286075,0,0.419499436209906,1.6507082516404,2.50793959844173,1.03366703667732,1.42306505074684,1.00416183829401,0.805658634218294,0.760272105718513,0.488124115096339,1.83831540172934,4.86085168729056,0.625098097988558,1.34717623575702,0.675668882899933,1.53316637465883,2.84779697870439,1.09921046358244,0,0,2.18047026071267,1.49091585508596,1.13967460498122,2.51577443545116,2.29469296599051,1.06400514659507,0.560677600142307,3.20246987189115,1.72667283892012,0,0.404132016209064,0.653847612453835,1.51357427644931,0.576175924479999,3.04617861383936,2.18512053781224,0.570471821544449,1.34503812496621,0.704606991862589,1.78060238804945,0.98315564691574,0.408308342509787,0.245668634623536,0.516628905878827,2.37600571456411,0.989067717114227,2.73048408581408,4.31170885089743,0.505008341862199,0.500474079487857,0.277064115484183,0,0.919463387397059,0.45071417671979,0.567160915800105,1.4351170855109,0.427114777637135,0.423863802319124,3.00091096084402,0.721367704669072,1.54584324027377,1.48893485065272,1.35021065793013,1.55899208257918,1.00973509697646,0.736399189138395,0.646584227275248,1.77504796258307,0.806016785821122,1.52604533079439,0.966304265816484,1.63647672354501,0.860413786167011,0.121973706129595,1.06023814657188,0.464775771478074,0.310983165046111,0.504641701751257,0.72995471815166,3.12899064659632,1.28648187638577,1.38134921352481,1.85747171212792,2.88751792667834,3.19428360107579,2.86593973132773,4.09718750801919,2.53676137284506,1.74303555273925,2.60997681022206,2.83145747136345,2.15843611637881,5.00171304030308,0,4.20725321410337,2.4694440679884,0,0,0,0,0,0.122988438543114,0.857839051492628,1.97550513735526,3.37205259772859,0.804231779293047,0.648119116109707,0.325808305310325,1.03993478527958,2.88662684050547,0.463721619900307,2.11335649624479,0.577465791044295,0.462985512576611,0.380508304469197,0,1.71697232418975,0,0.702012795417713,0.148631162288728,0,1.34385702559088,1.13420077793909,1.52249488594842,2.03443756959773,0.383382679165211,0.985326475791887,0,0,0,0,0.571481048629521,0.763976851116555,2.34434894420094,1.71072446022705,0.719792448923265,0.901029173531752,1.42913216315289,1.34557301214433,2.61576041299968,0.7333828582095,1.55126058909333,0,0.845302752556,0.26593811658487,1.04007436911366,1.28603687131071,0,1.8649552531127,0.142977993658148,2.17048642156577,0.823240336780769,1.30294473717494,0.355391948742546,0.791951872933429,1.80863626235752,0.871533458600294,1.29964888536674,0,0.502257091432126,0,2.39624855491583,0,0,1.30303176000821,1.84928690295345,0.358121926479791,0.784596007954691,0,0,0,0.76228387266739,2.60279707715243,0.773288812777695,1.17261385734044,0,0,0,0,0.36807447515742,0,0.542530047399471,1.24782516918484,0.892144943985809,0.630809660135739,1.28855556491985,0.300946099727719,0,0,0,1.84369168541703,0.955719759148911,1.17480694477644,0.343143423810856,0.206768026122887,0.215714200818617,0.106727557803444,0,1.66435439510497,0.30239029332968,1.48864684691266,3.52962538562544,2.24528075546459,1.40953064181271,0,1.93024705372329,0,0.462629081407967,1.42049380250502,1.39616165223476,1.55776328755086,1.04589340613963,0.241718899183244,1.20303882181971,1.10497186723076,0.918515585316854,1.0925470080403,0.393373244878272,4.06079651616671,0.770153371044148,4.70609861506113,2.92278449306521,0.316654886678627,0,1.36074964221213,1.29549549661284,6.16909010761157,1.08378575017541,2.00675909541941,4.33289664176565,4.15538004464362,2.91037181138832,0,0,0.256450125116389,1.31205858279882,2.92840555197873,0.103041011647722,2.01452822600355,0.990113999047056,1.72279661398852,1.30012049207304,0,0.3866828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| |||
|short_description=p4@VARS | |||
}} |
Revision as of 11:07, 22 January 2014
Short description: | p4@VARS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VARS_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENST00000440048_5end |
EntrezGene: | VARS |
HGNC: | 12651 |
UniProt: | A2ABF4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.03e-10 | 43 |
smooth muscle myoblast | 2.03e-10 | 43 |
embryonic cell | 2.56e-10 | 250 |
mesodermal cell | 1.19e-09 | 121 |
muscle precursor cell | 1.91e-08 | 58 |
myoblast | 1.91e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.91e-08 | 58 |
muscle cell | 3.70e-08 | 55 |
vascular associated smooth muscle cell | 3.83e-08 | 32 |
electrically responsive cell | 2.66e-07 | 61 |
electrically active cell | 2.66e-07 | 61 |
epithelial cell of tracheobronchial tree | 8.23e-07 | 9 |
epithelial cell of lower respiratory tract | 8.23e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
artery | 1.49e-12 | 42 |
arterial blood vessel | 1.49e-12 | 42 |
arterial system | 1.49e-12 | 42 |
systemic artery | 1.50e-12 | 33 |
systemic arterial system | 1.50e-12 | 33 |
epithelial vesicle | 4.82e-10 | 78 |
vessel | 5.22e-10 | 68 |
epithelial tube open at both ends | 4.60e-09 | 59 |
blood vessel | 4.60e-09 | 59 |
blood vasculature | 4.60e-09 | 59 |
vascular cord | 4.60e-09 | 59 |
epithelial tube | 9.08e-09 | 117 |
vasculature | 1.24e-08 | 78 |
vascular system | 1.24e-08 | 78 |
aorta | 1.64e-08 | 21 |
aortic system | 1.64e-08 | 21 |
paraxial mesoderm | 1.80e-08 | 72 |
presumptive paraxial mesoderm | 1.80e-08 | 72 |
larynx | 2.62e-08 | 9 |
multilaminar epithelium | 2.70e-08 | 83 |
somite | 2.96e-08 | 71 |
presomitic mesoderm | 2.96e-08 | 71 |
presumptive segmental plate | 2.96e-08 | 71 |
dermomyotome | 2.96e-08 | 71 |
trunk paraxial mesoderm | 2.96e-08 | 71 |
dense mesenchyme tissue | 3.55e-08 | 73 |
trunk | 3.78e-08 | 199 |
skeletal muscle tissue | 3.52e-07 | 62 |
striated muscle tissue | 3.52e-07 | 62 |
myotome | 3.52e-07 | 62 |