FFCP PHASE1:Hg19::chr6:83073396..83073408,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=33bp_to_uc010kbj.2_5end | |||
|coexpression_cluster_id=C1089 | |||
|description=CAGE_peak_5_at_TPBG_5end | |||
|id=chr6:83073396..83073408,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.54e-23!180;CL:0000057!6.07e-16!75;CL:0000393!6.24e-13!60;CL:0000211!6.24e-13!60;CL:0000187!2.60e-12!54;CL:0000680!1.07e-11!57;CL:0000056!1.07e-11!57;CL:0000355!1.07e-11!57;CL:0000192!4.41e-11!42;CL:0000514!4.41e-11!42;CL:0002321!5.88e-11!248;CL:0000220!1.43e-10!246;CL:0000183!2.73e-10!59;CL:0000359!3.99e-09!32;CL:0002620!2.45e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.01e-08;23!CL:0002334;6.27e-07;12!CL:0000134;9.27e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.16e-13,76;CL:0000393,1.41e-08,61;CL:0000211,1.41e-08,61;CL:0000187,2.62e-08,55;CL:0000192,1.44e-07,43;CL:0000514,1.44e-07,43;CL:0002620,1.64e-07,23;CL:0000680,2.16e-07,58;CL:0000056,2.16e-07,58;CL:0000355,2.16e-07,58;CL:0002334,3.44e-07,12;CL:0002321,5.76e-07,250;CL:0000359,8.97e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.75e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.28e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.54e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000486!3.33e-16!82;UBERON:0000475!9.14e-14!365;UBERON:0004290!1.25e-13!70;UBERON:0000914!2.80e-13!83;UBERON:0002329!2.80e-13!83;UBERON:0003077!2.80e-13!83;UBERON:0003059!2.80e-13!83;UBERON:0007282!2.80e-13!83;UBERON:0009618!2.80e-13!83;UBERON:0007285!2.80e-13!83;UBERON:0002100!6.19e-13!216;UBERON:0003102!4.99e-12!95;UBERON:0000468!2.09e-11!659;UBERON:0002385!1.92e-10!63;UBERON:0001015!1.92e-10!63;UBERON:0000383!1.92e-10!63;UBERON:0001134!2.11e-10!61;UBERON:0002036!2.11e-10!61;UBERON:0003082!2.11e-10!61;UBERON:0005156!2.13e-10!59;UBERON:0000990!2.13e-10!59;UBERON:0005256!1.11e-09!143;UBERON:0003100!2.25e-09!41;UBERON:0003134!2.59e-08!37;UBERON:0000474!2.59e-08!37;UBERON:0004573!5.00e-08!33;UBERON:0004571!5.00e-08!33;UBERON:0003133!5.04e-08!48;UBERON:0000467!7.88e-08!625;UBERON:0000481!8.92e-08!347;UBERON:0000480!1.16e-07!626;UBERON:0002199!1.30e-07!45;UBERON:0002416!1.30e-07!45;UBERON:0003104!1.54e-07!238;UBERON:0009142!1.54e-07!238;UBERON:0001637!1.87e-07!42;UBERON:0003509!1.87e-07!42;UBERON:0004572!1.87e-07!42;UBERON:0000922!3.08e-07!612;UBERON:0000119!4.30e-07!312;UBERON:0000483!4.87e-07!309;UBERON:0002097!4.93e-07!40 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,7.84e-13,99;UBERON:0000486,1.24e-11,83;UBERON:0002329,7.76e-10,71;UBERON:0003059,7.76e-10,71;UBERON:0007282,7.76e-10,71;UBERON:0004290,7.76e-10,71;UBERON:0009618,7.76e-10,71;UBERON:0003077,1.58e-09,72;UBERON:0007285,1.58e-09,72;UBERON:0007524,3.13e-09,73;UBERON:0002100,6.55e-09,199;UBERON:0005256,1.30e-08,122;UBERON:0007503,2.12e-08,78;UBERON:0002199,2.35e-08,46;UBERON:0002416,2.35e-08,46;UBERON:0003100,4.82e-08,41;UBERON:0005156,1.20e-07,59;UBERON:0000990,1.20e-07,59;UBERON:0002097,1.73e-07,41;UBERON:0004573,5.08e-07,33;UBERON:0004571,5.08e-07,33;UBERON:0003134,5.72e-07,37;UBERON:0000474,5.72e-07,37;UBERON:0004923,8.12e-07,66 | |||
|phase1_expression=0.908391896352783,0.642301571672949,1.83240725324762,0,0.893922188854576,1.74467704820074,0,2.52687949370732,0.261185628199839,2.21160542851358,1.39560233594486,0.655324116390517,0.791300934685361,0.37129905888014,0,3.36162573225888,4.82155622419182,2.92124036154949,0.975865597581014,0.492484232307152,0.612002073732759,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,3.91567694411725,3.69754010166788,0,0,0,0.553995408531877,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0,0,0.434539556882471,0,0.486634870302636,0.189069634328136,0.221729397462564,0.263504357079378,0.130979075497713,3.27865759463288,1.48313777113772,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0,0,0.417989933073621,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0.112611480483322,0,0,0.916008719652036,0,0,3.05265836499774,3.47880366186723,1.8994576749687,1.32409180813219,7.74458876021797,3.54668382198357,0.560677600142307,1.06748995729705,2.4666754841716,0.311211035399766,0.404132016209064,0.490385709340376,0.302714855289863,0.576175924479999,1.40592859100278,5.30672130611545,3.99330275081114,3.13842229158782,2.46612447151906,1.45685649931318,1.26405726032024,1.02077085627447,2.94802361548243,1.03325781175765,3.56400857184616,0.247266929278557,0.910161361938026,1.43723628363248,1.34668891163253,2.37725187756732,1.10825646193673,1.31693286264251,0.612975591598039,0.751190294532984,0.680593098960126,1.4351170855109,0.427114777637135,1.90738711043606,3.60109315301283,1.95799805553034,1.03056216018252,0.744467425326359,1.0126579934476,1.16924406193438,1.00973509697646,1.19664868234989,1.93975268182574,1.06502877754984,0.806016785821122,2.7129694769678,2.89891279744945,1.36373060295417,2.00763216772303,1.46368447355514,1.45782745153634,2.32387885739037,3.73179798055334,2.77552935963191,1.09493207722749,1.56449532329816,2.57296375277154,1.38134921352481,0.464367928031979,0.721879481669586,0,1.01150814046861,0.482022059766964,0.330881918197182,0,0.949082476444386,0.269662616320329,0.784885860501384,0.38474715694639,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0.122988438543114,1.20097467208968,5.1582634142054,2.24803506515239,3.82010095164197,1.01847289674383,0,2.07986957055916,0,0,0.234817388471643,0,0,0.190254152234598,1.58040879591855,2.57545848628462,0,0,0,0,1.51183915378974,0.850650583454319,2.05984602216551,4.06887513919547,1.91691339582606,0,0,0,0,0,0.317489471460845,0,0,1.71072446022705,0,0,0,1.12131084345361,0,0.95339771567235,1.80980402060889,0,2.535908257668,2.92531928243358,1.04007436911366,0.257207374262142,0,1.3321108950805,0.857867961948885,0,1.64648067356154,2.60588947434988,1.77695974371273,1.58390374586686,0.602878754119172,3.48613383440118,1.79951384127703,0,0,0,0.958499421966331,0,4.27910715122155,0.723906533337896,0,0.537182889719687,0,0,0,0,0.508189248444927,0,0.773288812777695,0.837581326671744,0,0,0,0,0.24538298343828,0.500170521059677,0.813795071099207,1.66376689224646,2.49800584316026,0.630809660135739,2.10854546986884,0.902838299183157,0,0,3.98535359121262,1.47495334833363,3.5622281931914,0.391602314925481,0,0,0,0.106727557803444,0.303127571446259,3.32870879020994,2.11673205330776,2.97729369382532,0.460385919864187,1.40330047216537,1.40953064181271,1.53512174720011,2.57366273829772,1.48418066444991,2.7757744884478,4.08391968220192,4.59912073677331,7.2695620085707,1.62694529843943,0.483437798366489,2.80709058424599,4.14364450211533,2.64073230778596,1.63882051206045,1.18011973463482,0,0.616122696835318,0,0,0.316654886678627,0,0,0,0,0.270946437543853,0,0.509752546090077,0.831076008928724,0.895499018888713,0,0,0.512900250232778,0.328014645699706,0.325378394664303,0.412164046590889,0.915694648183434,0.82509499920588,1.14853107599234,0.650060246036521,6.42735719376638,4.15684088656124,1.07834031980251,0.614014698904518,1.24052915236078,1.07420244868274,0.435050081742686,1.53407929348982,1.06838442776085,7.10725136052206,4.42037154939744,4.72167036229961,5.76599350876635,3.71876439437829,23.9257383591286,6.2733354314454,1.84820148105653,0.532306030317022,4.34966496037536,1.8532421910392,0.572499546967965,0.372158369359667,0.316379424718726,0.190630193923825,0.255897791311334,0.42793898803392,5.72765846266686,0.78494864019923,1.97859703341646,2.47083326762449,0.824686816419805,0.606547444719948,3.17020642346017,2.52755073743389,0.48763373908959,1.94970791705028,3.16950440270266,1.9109987597118,0.565621727814851,1.13008116620243,2.2054613741845,0.66343897524122,2.19225442626881,1.73632660280006,1.9676842561399,0.202910376962704,1.54911749049875,2.25356482025793,1.14729081763241,0.88424136911809,0.7133421029625,3.54761064070598,0.422215270595328,0.658589785919804,0.379473173765715,1.74967360122491,2.98288549449087,0,2.17781969722645,0.0941438007767792,5.59656984472599,6.7388590267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| |||
|short_description=p5@TPBG | |||
}} |
Revision as of 12:50, 22 January 2014
Short description: | p5@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TPBG_5end |
Coexpression cluster: | C1089_Smooth_Small_Fibroblast_Prostate_anaplastic_mesenchymal_nasal |
Association with transcript: | 33bp_to_uc010kbj.2_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.16e-13 | 76 |
electrically responsive cell | 1.41e-08 | 61 |
electrically active cell | 1.41e-08 | 61 |
muscle cell | 2.62e-08 | 55 |
smooth muscle cell | 1.44e-07 | 43 |
smooth muscle myoblast | 1.44e-07 | 43 |
skin fibroblast | 1.64e-07 | 23 |
muscle precursor cell | 2.16e-07 | 58 |
myoblast | 2.16e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.16e-07 | 58 |
preadipocyte | 3.44e-07 | 12 |
embryonic cell | 5.76e-07 | 250 |
vascular associated smooth muscle cell | 8.97e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
surface structure | 7.84e-13 | 99 |
multilaminar epithelium | 1.24e-11 | 83 |
somite | 7.76e-10 | 71 |
presomitic mesoderm | 7.76e-10 | 71 |
presumptive segmental plate | 7.76e-10 | 71 |
dermomyotome | 7.76e-10 | 71 |
trunk paraxial mesoderm | 7.76e-10 | 71 |
paraxial mesoderm | 1.58e-09 | 72 |
presumptive paraxial mesoderm | 1.58e-09 | 72 |
dense mesenchyme tissue | 3.13e-09 | 73 |
trunk | 6.55e-09 | 199 |
trunk mesenchyme | 1.30e-08 | 122 |
epithelial vesicle | 2.12e-08 | 78 |
integument | 2.35e-08 | 46 |
integumental system | 2.35e-08 | 46 |
female organism | 4.82e-08 | 41 |
reproductive structure | 1.20e-07 | 59 |
reproductive system | 1.20e-07 | 59 |
skin of body | 1.73e-07 | 41 |
systemic artery | 5.08e-07 | 33 |
systemic arterial system | 5.08e-07 | 33 |
female reproductive organ | 5.72e-07 | 37 |
female reproductive system | 5.72e-07 | 37 |
organ component layer | 8.12e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.54e-10 | 14 |